Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01560 ATGGACGAGGAGATAGAGGAGGGAATGCTCATAGAAGACGAGACCGAGCCCCCGCCGCCAGACAGCAAGACGGGCAAAATATCTCCCTACGAAATGCTCCGAGAGAGCAAAAGTTCTGTGGAGGAGATCGTCACCAAGATGCTCTCCATCAAGAAGCATGGCGAGCCTAAAACTCAGCTCAGAGAACTCGTTACCCAGATGTTCCTTCACTTCGTAACCCTTCGCCAGGCCAACCGCTCTATTTTGCTGGAAGAGGACCGAGTGAAAGCTGAAACAGAGCGAGCAAAAGCTCCAGTTGACTTCACTACTCTGCAACTTAACAACTTGATGTATGAAAAGAGTCACTATGTTAAAGCAATAAAAGCCTGCAGAGACTTCAAATCAAAGTATCCTGATATTGAACTTGTGTCTGAGGATGAGTTTTTCCGGGATGCACCCGAAGACATTAAGAACTCCACGAGGTCGAAGGACAGCGCGCACAATCTGATGCTGCAGAGGCTTGACTATGAGCTTTTCCAGGTGATCTTGAGTTGTTTATTATCAATGTTTCTGATAATTAGTGATACTAATAACTCGGTTAGGACGGATGAAAGCATTAGCTCCATTTTAAATACAAAATTTGAGGATGCATCACCTTCCTTTTGGTCGATTATTGTATTGATATATCCATCATTTTATCAGCGCAAAGAACTTTGCAAACGTCGAGATGAACTTGAACAGCATAAGAAAAGCCTACTAGAAGTCATTGCTAATAGAAAGAAATTCCTGTCAAGTCTTCCCTCACACCTCAAGTCCTTGAAGAAGGCATCCTTGCCCGTACAGAATCAGTTGGGGATATTGCAGACAAAGAAATTAAAGCAACACCAACTAGCAGAGCTACTTCCGCCTCCTCTTTATGTAATCTACTCGCAATTCTTGGCACAAAAGGAAGCATTTGGCGAAAACATTGAATTGGAGATAGTAGGAAGTGTCAAAGATGCCCAAGCTTTTGCACGCAATCAAGCAAATAAGGAAACTGGTACCCGGAATAATATTGTCATTGCAAATATTCTAGGTGCATCAACCAATGCTGAGAGCAACAAGTTGGAGGATGATGCCCCTGACGAAGATGATGATGGCCAAAGGAGGAGAAAACGTCCAAGGAAGATTCCAGCTAAGGTGAATATTGAGCATGCAGGGATATATCAAGTTCATCCTCTAAAGATCATCCTTCATATATATGACAATGAAACATGTGAACCCAAGTCAATGAAATTGCTTTCTCTGAAGTTTGAATGCTTGTTAAAGTTGAACGTTATTTGTGTTGGGATTGAAGGATCTCACGAAGGTCCTGAGAATAACATCTTATGCAACTTGTTCCCTGATGATACTGGCCTTGAGCTGCCTCACCAGTCAGCCAAGCTTGTTGTTGGCGAAACTCTTGCATTTAGTGATAAGAGAACCTCTCGACCATATAAGTGGGCCCAACATTTGGCTGGGATTGATTTTTTGCCAGAATTGCCACCGTTGGTGAGTGCACAAGGATCTGCCAGTGGTGAAACTGTTAGAAGTGATATTGTATCAGGCCTCTCAATGTATCGTCAGCAAAACCGAATACAGACAGTTGTGCAAAGATTACGCTCTCGGAAAAAGGCTCAGCTGGCTCTTGTGGAACAGCTTGATTCACTTGAAAAACTCAAATGGCCAGTTCTGACACGCGATGATGTCCCATGGGTTTCGCATAAACCTTCATGCTGTTTGCAAGGTTGGTCGCTCGTAGGTTACTCTACAAGGCAGGCATCATCTTTGACTACAATGGAGAAAGAGAAAGTTCAGGATCCTGTAGATGTTGATATGGTTGGAAAATCTGGCATTTCAAGAGAAGAGATTGACGGTGCTAGGGAAGATGGGGAACTTCCTGCCCTAGTTTCATCTACATCTATCTTAAATAATACTCAAGTTACTCCCTTAAGAACACCCAATCTTGAGCATTCCAAACAGTTGACTCTAATTTCCAAAAGCATTACACCTCAAGCCAATTACTCTAGGATGCTAAGTTTCAATAAACATGATGAAGATTATGAGTTGATGCTAGATGTTGACAGCGACCAGGATGAGCCAGTGCAAACTGAGCTTGCAGCAGATGATGCAGCGTCTATTCCTTCCAACGACATAACAAGAAAGACATGGGTGGATTATGGGTCCAAGGAATATTGCCTTGTTATTACTAGAAACACTGAGCCACCTGCCAAAAATCTTAAATTGCAAGCCAAGATTAAAATCAGCATGGAGTACCCTCTTAGGCCTCCTGTCTTCACTTTGAATCTTTACACGATGAATTCGGAAGAAAACCGTGATGAGAGCAACGACTCTAATTGGTATAATGAACTTCGGGCCATTGAAGCTGAGGTGAATCTCCATATACTTAAGATGCTGCCTTTGGATCAAGAGAACTATATATTGTCTCATCAAATTTGTTGTCTTGCTATGTTGTTTAACTACTGCATTAGCGAGGCATCCCTGCCCTCTGAAAGAAGAAAGAGTAGTTCTGTCATTGATGTTGGATTATGCAAACCTGTTAGTGGTAGTTTACATGCCAGATCATTTAGAGGAAGGGATCGTAGGAAGATGATATCTTGGAAAGATATTGAATGCACTCCTGGCTATCCTTGCTAA 2655 42.52 MDEEIEEGMLIEDETEPPPPDSKTGKISPYEMLRESKSSVEEIVTKMLSIKKHGEPKTQLRELVTQMFLHFVTLRQANRSILLEEDRVKAETERAKAPVDFTTLQLNNLMYEKSHYVKAIKACRDFKSKYPDIELVSEDEFFRDAPEDIKNSTRSKDSAHNLMLQRLDYELFQVILSCLLSMFLIISDTNNSVRTDESISSILNTKFEDASPSFWSIIVLIYPSFYQRKELCKRRDELEQHKKSLLEVIANRKKFLSSLPSHLKSLKKASLPVQNQLGILQTKKLKQHQLAELLPPPLYVIYSQFLAQKEAFGENIELEIVGSVKDAQAFARNQANKETGTRNNIVIANILGASTNAESNKLEDDAPDEDDDGQRRRKRPRKIPAKVNIEHAGIYQVHPLKIILHIYDNETCEPKSMKLLSLKFECLLKLNVICVGIEGSHEGPENNILCNLFPDDTGLELPHQSAKLVVGETLAFSDKRTSRPYKWAQHLAGIDFLPELPPLVSAQGSASGETVRSDIVSGLSMYRQQNRIQTVVQRLRSRKKAQLALVEQLDSLEKLKWPVLTRDDVPWVSHKPSCCLQGWSLVGYSTRQASSLTTMEKEKVQDPVDVDMVGKSGISREEIDGAREDGELPALVSSTSILNNTQVTPLRTPNLEHSKQLTLISKSITPQANYSRMLSFNKHDEDYELMLDVDSDQDEPVQTELAADDAASIPSNDITRKTWVDYGSKEYCLVITRNTEPPAKNLKLQAKIKISMEYPLRPPVFTLNLYTMNSEENRDESNDSNWYNELRAIEAEVNLHILKMLPLDQENYILSHQICCLAMLFNYCISEASLPSERRKSSSVIDVGLCKPVSGSLHARSFRGRDRRKMISWKDIECTPGYPC 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23150397 23155543 + Lsi04G015600.1 Lsi04g01560 661609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01560 884 MobiDBLite consensus disorder prediction 358 383 - -
Lsi04g01560 884 Pfam Fms-interacting protein/Thoc5 226 496 IPR019163 -
Lsi04g01560 884 Pfam Fms-interacting protein/Thoc5 73 173 IPR019163 -
Lsi04g01560 884 Coils Coil 228 248 - -
Lsi04g01560 884 PANTHER FMS INTERACTING PROTEIN 18 173 IPR019163 -
Lsi04g01560 884 PANTHER FMS INTERACTING PROTEIN 225 882 IPR019163 -
Lsi04g01560 884 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01560 K13174 THOC5; THO complex subunit 5 - csv:101203145 1427.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g758 Blo01g01528 . . . . . . Bma01g02273 . . Cma01g01836 Cma09g00231 Car01g01430 . . Cpe06g00161 . . . . . . . . . . . . . . . . Cone7ag1372 . . Lsi04g01560 Csa04g02410 . . . . . . . . . . Sed01g2669 . Cmo09g00223 . . . Car09g00199 . Cpe02g00183 Bhi09g03321 Tan01g4792 Cmetu07g0931 . Hepe01g1764 Mch11g0290 . Cla05g02042 Cam05g2192 Cec05g2210 Cco05g2255 Clacu05g2186 Cmu05g2052 Cre05g2181 . . Chy07g00134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008491 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01560 Lsi_Chr04 FPKM 0.728404 1.136221 0.131372 0.147228 0.134603 0.094699 0.0 0.084336 0.136712 0.0