Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01563 ATGGGTGAAATTTTTCTATCTGTTTTGGTGTTTTTTCTCACTCTATTATGGTACATTTCTTTAAAGAGAAACAAGAAGGAAGCCATTAGAAATGGAACTAAGCTCCCTCCTGGTTCTTTGGGATGGCCTTATATTGGAGAAACCCTTCAACTCTACTCTCAAGACCCTGAATTTTTCTTCGCCACCAAACAGAAAAGGTATGGGGAGATTTTTAAGACGCATATACTTGGATGCCCTTGTGTGATGTTGGCTAGTCCCGAGGCAGCAAGGTTTGTACTAATGACACAGGCTCATTTGTTCAAGCCAACTTACCCCAAAAGCAAAGAGCTTTTGATTGGCCCATCTGCTCTGTTTTTTCACCAAGGTGACTACCATTGCCGTCTGAGGAAGCTGGTTCAGAACTCTCTTTCTTTGGATGCCATCCGCACCTTAGTCCCCGATATCGACTCCGCCGCTGCCTCCGCCCTCGACTCCTGGGCCAGTGCCGTACTCATCAACACCTTTCATGAAATGAAAAAGATATCATTTGAAGTTGGGATATTGACCATTTTTGGCCATTTGGATGCGGCTTACAAAGAGGACCTTAAAAACAACTACAGCATATTGGACGCAGGCTACAATTCTTTTCCCACCAATATTCCCGGAACTCCATACAAAAAGGCACTCTCAGCAAGAAAGCGGCTAAGTAAAATCCTAGGTGACATAATCCATGAGAGGAGAGAAAAAAAACTGAGGGAAAAGGATCTATTGGGAAACCTTCTCAACTCCATTGACGATGAAAGTGAAGTTAAAATAAGCGATGCCCAAATCGCAGATAACATTATAGGAGTGCTTTTTGCAGCTCAAGACACCACTGCCAGTGTCTTGACTTGGATTGTTAAGTACCTCCATGACCATCCAAAGCTTCTTCAATCCGTAAAGGAAGAGCAAGAGGGAATTCTAAAATTAAATTGTGAGAATAACGAAGGGTTGAACTGGGTTCAGACAAGAAACATGCCAATCAGTTACAAGGTGGTATTGGAGAGCTTAAGGATGGCGAGCATTATATCGTTCACTTTTAGAGAAGCTGTAGCTGATGTGGAATACAAAGGATACTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTGTTCCGAAACATCCATCACAGTCCAGAATATTTCCCTGATCCTCACAATTTCGACCCTTCCAGATTTGAGGTTGCGCCAAAACCCAATACATTTATGCCATTTGGCAGTGGAGTTCATGCCTGCCCAGGAAATGAACTTGCCAAGCTGGAGATCTTGATCATGATTCATCATCTAGTCACCAAGTTCAGGTGGGAATTGGTTGGTTCGCAAAACGGGGTTCAACACAGTCCATTTCCCGTTCCCTTTCAAGGCCTTCCAGCCAGATTTTGGAAGATAGCCCCTTAG 1413 43.45 MGEIFLSVLVFFLTLLWYISLKRNKKEAIRNGTKLPPGSLGWPYIGETLQLYSQDPEFFFATKQKRYGEIFKTHILGCPCVMLASPEAARFVLMTQAHLFKPTYPKSKELLIGPSALFFHQGDYHCRLRKLVQNSLSLDAIRTLVPDIDSAAASALDSWASAVLINTFHEMKKISFEVGILTIFGHLDAAYKEDLKNNYSILDAGYNSFPTNIPGTPYKKALSARKRLSKILGDIIHERREKKLREKDLLGNLLNSIDDESEVKISDAQIADNIIGVLFAAQDTTASVLTWIVKYLHDHPKLLQSVKEEQEGILKLNCENNEGLNWVQTRNMPISYKVVLESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHSPEYFPDPHNFDPSRFEVAPKPNTFMPFGSGVHACPGNELAKLEILIMIHHLVTKFRWELVGSQNGVQHSPFPVPFQGLPARFWKIAP 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23194296 23197629 + Lsi04G015630.1 Lsi04g01563 661612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01563 470 SUPERFAMILY Cytochrome P450 32 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 Pfam Cytochrome P450 36 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 410 419 IPR017972 GO:0005506|GO:0016705
Lsi04g01563 470 PRINTS E-class P450 group I signature 289 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS E-class P450 group I signature 417 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS E-class P450 group I signature 336 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS E-class P450 group I signature 269 286 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS E-class P450 group I signature 407 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PANTHER CYTOCHROME P450 26 8 467 - -
Lsi04g01563 470 PANTHER CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE 8 467 - -
Lsi04g01563 470 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS P450 superfamily signature 417 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS P450 superfamily signature 408 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 PRINTS P450 superfamily signature 280 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01563 470 Gene3D Cytochrome P450 24 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01563 Lsi08g01473 CCT
Lsi04g01563 Lsi08g01473 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02017 Lsi-Chr2:26173003 Lsi04g01563 Lsi-Chr4:23194296 8.20E-92 dispersed
Lsi03g00492 Lsi-Chr3:5625963 Lsi04g01563 Lsi-Chr4:23194296 0 dispersed
Lsi04g01563 Lsi-Chr4:23194296 Lsi07g00205 Lsi-Chr7:2230672 6.46E-78 dispersed
Lsi09g01869 Lsi-Chr9:27505028 Lsi04g01563 Lsi-Chr4:23194296 8.70E-57 dispersed
Lsi01g00157 Lsi-Chr1:1582418 Lsi04g01563 Lsi-Chr4:23194296 8.26E-22 transposed
Lsi02g00297 Lsi-Chr2:2570852 Lsi04g01563 Lsi-Chr4:23194296 2.82E-38 transposed
Lsi02g01343 Lsi-Chr2:17923191 Lsi04g01563 Lsi-Chr4:23194296 1.02E-24 transposed
Lsi02g01608 Lsi-Chr2:21968163 Lsi04g01563 Lsi-Chr4:23194296 1.56E-56 transposed
Lsi03g00183 Lsi-Chr3:2423987 Lsi04g01563 Lsi-Chr4:23194296 4.27E-85 transposed
Lsi06g00651 Lsi-Chr6:9732088 Lsi04g01563 Lsi-Chr4:23194296 6.22E-82 transposed
Lsi06g01257 Lsi-Chr6:23155590 Lsi04g01563 Lsi-Chr4:23194296 2.14E-67 transposed
Lsi07g00390 Lsi-Chr7:4182682 Lsi04g01563 Lsi-Chr4:23194296 7.08E-28 transposed
Lsi07g00776 Lsi-Chr7:8469411 Lsi04g01563 Lsi-Chr4:23194296 1.17E-171 transposed
Lsi11g01644 Lsi-Chr11:24754154 Lsi04g01563 Lsi-Chr4:23194296 1.16E-55 transposed
Lsi04g01563 Lsi-Chr4:23194296 Lsi08g01473 Lsi-Chr8:22849026 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01563 K09843 - csv:101213916 879.396