Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01567 ATGGATGATGTGAAATTAGCTGATCATACATCTTCTTCACAGTCCTCGTTAATCTCCCAAGATGGTAGTCATTCTCTTGATGGAAGTCCAAGCCAGCTAGTTAACAATGGTATTATGGGTCCGAGCCAAGTTCTCTCAAATTCTGTTGCTAATGGAAAACTGGAAGGTAAAATTGAACTCTCTACCAGCCCAGTTGATGGAACTGTGCGATCTGAGAGTCCAGATCAAATGTCTGAAAATTCTGTATCTTCAGCCATAGAAGATGCTCATTGTGATGTAACTTTGAGGCAAGATGAACGGACTACATCCAATAATCCAGGTCTGAGTTCAACAGTTTCAGATAATAGATTAGAGGAACACAATCAAAATACGTTGATGGAAGACCCCAGAACTCAGTCGGTTGAAGATATGCCTGAGAAACATCCTCAAGAACAATCTACAGTCCATAGTAATTCTTCTAATGATGTCCTTATGCCATCTGTTTCCTCTTCAGTTGAGGATACACCTGAGAAACGTCCTCAGGAACATTCCTCAGTCCATAATGACTTTGCTGCTACCAATGAGGTCATGATGCCATCTGTTTTCTCTTCAGTTGAGGATATGCCAGAGAAACTTTCTCAGGAACAATCTCCAGTCTGTAATGACTCTGCTACTATCAAGGATGACATTACGCCATCTGTTCTCTCTTCTGAGTCCGTGGTTATAAAGAATGAGGATGCAGTACAATTAGATGAGCTTGCAGAGGGCGAGAGAGTTTCAGGTGGAAAAACTGAATCTGTTGATTCTCTAAAAGATGTGAAGCAAAGTGATATAAACAGAGGCCTTATTGATACAACTGCACCATTTGAATCAGTTAAAGAAGCTGTTTCAAAGTTTGGTGGGATTGTTGATTGGAAAGCTCATCGAATCCAAACAGTTGAGAGACGCAAACTTGTGGAGCAAGAACTTGAGAAATTACACGAGGAGATTCCTGAATACAGGAGACAGTCGGAGGCTGCTGAAGATGAGAAAAAGAAAGTTCTAAAGGAGCTGGATAGCACTAAGCGACTGATAGAAGAACTAAAGCTTAATCTAGAGAGGGCACAAACAGAAGAGCATCAGGCAAGGCAAGACTCTGAGCTTGCAAAACTCAGGGTTGAAGAGATGGAGCAAGGCATTGCTGAAGAGTCTAGCGTAGCAGCCAAGGCACAGCTTGAGGTTGCTAAAGCCAGGCATATAGCTGCAGTTTCAGAGCTTAAATCTGTCAAAGAAGAGTTGGAATCACTTTGCAAAGAGTTTGCTTCTTTGGTTACAGAAAAGAATGCAGCAATAGCTAAAGCTGAAGATGCTGTTGCTGCATCTAAGGAAGTTGAGAAGGCAGTTGAAGATCTAACTATTGAGCTTATGGCCAACAAGGAGTCGTTAGAGTCTGCACATGCTACTCATTTGGAGGCAGAGGAGCAAAGAATTGGTGCAGCTATGGCCAGAGAGCAAGATTCTCTTAACTGGGAGAAAGAGTTGAAGCAGGCTGAAGAGGAGCTTCGGAGTCTTAATCAGAAAATTATGTCGGCAAAGGATCTGAAATCAAAACTGGATACTGCCTCAAATTTGCTAATAGATTTAAAAGCTGAATTAGCAGCTTATATGGAATCAAAACTGGAAGAGGAGCCTGATAATGATGGTCACACAAAAAGCGAGGGGGAGGATCCCGAAAAGAAAACACATACAGATATACAAGCAGCTGTTGCTTCAGCGAAACAGGAACTTGAGGAAGTAAAACTCAACATCGAGAAAGCAACTTCTGAAATAAACTGTCTGAAGGTGGCCGCAACATCATTGAAAACAGAGCTTGAAAGAGAGAAATCTGCTCTAGCCACCTTGAAGCAAAGAGAAGGAATGGCATCTATAGCAGTTGCATCTCTTGAAGCTGAAGTGGAAAGAACTAGGTCAGAAATAGCTTTAGTTCAAATGAAGGAAAAAGAGGCCAGGGAAATGATGGTGGAGCTTCCTAAACAATTACAGCAAGCTGCACAAGAAGCTGATCAGGCAAAATCAGTGGCTGAGGTGGCTCGAGAGGAGCTACGCAAAACAAAAGAGGAAGCAGAGCAAGCCAAGGCTGGAGCAAGTACTATGGAGAGTAGATTGCTTGCTGCCCAGAAAGAGATTGAGGCTGCAAAGGCTTCAGAGAGACTGGCGTTGGCAGCAATCAAGGCATTACAAGAGAGCGAATCAGCAAGAGATACCAACAATGCGGACTCTCCAGCAGGAGTTACACTCTCACTAGAGGAATACTATGAGCTTAGCAAGTGTGCTCACGAGGCAGAGGAACAAGCCAACCTCAGAGTGGCAGCTGCACTGTCTCAAATTGAGGTAGCCAAGGAATCCGAGTCAAGAAGCGTGGAAAAGTTAGAAGAAGTAACCCAGGAGATGGCTACAAGAAAGGAAGCACTAAAAATTGCCATGGAGAAGGCTGAAAAAGCCAAGGACGGAAAGTTGGGTGTAGAACAAGAGTTACGAAAATGGAGAGCCGAGCATGAACAACGAAGGAAGGCTGGTGACACTAGCATAGGATTAATGAACCCGATTCGCAGTCCAAGGGCGAGTTTCGAAGGGAAGAACGAACCATCGAATTTAGTCAGCGCATCTGAAGCCACAGGTACTGATCCCTCAATTTCAACAAGCCCCAAGGGAAATATGCAAAGAAGCTTTACTACATTGGATTCGTTCTCAGAAGCAAAGGCACCAAAGAAAAAGAAGAGGTCATTTTTTCCTCGAATTCTCATGTTCCTGGCCAGAAAAAAGACTCAACCAAACAAGACATCTTAA 2805 43.32 MDDVKLADHTSSSQSSLISQDGSHSLDGSPSQLVNNGIMGPSQVLSNSVANGKLEGKIELSTSPVDGTVRSESPDQMSENSVSSAIEDAHCDVTLRQDERTTSNNPGLSSTVSDNRLEEHNQNTLMEDPRTQSVEDMPEKHPQEQSTVHSNSSNDVLMPSVSSSVEDTPEKRPQEHSSVHNDFAATNEVMMPSVFSSVEDMPEKLSQEQSPVCNDSATIKDDITPSVLSSESVVIKNEDAVQLDELAEGERVSGGKTESVDSLKDVKQSDINRGLIDTTAPFESVKEAVSKFGGIVDWKAHRIQTVERRKLVEQELEKLHEEIPEYRRQSEAAEDEKKKVLKELDSTKRLIEELKLNLERAQTEEHQARQDSELAKLRVEEMEQGIAEESSVAAKAQLEVAKARHIAAVSELKSVKEELESLCKEFASLVTEKNAAIAKAEDAVAASKEVEKAVEDLTIELMANKESLESAHATHLEAEEQRIGAAMAREQDSLNWEKELKQAEEELRSLNQKIMSAKDLKSKLDTASNLLIDLKAELAAYMESKLEEEPDNDGHTKSEGEDPEKKTHTDIQAAVASAKQELEEVKLNIEKATSEINCLKVAATSLKTELEREKSALATLKQREGMASIAVASLEAEVERTRSEIALVQMKEKEAREMMVELPKQLQQAAQEADQAKSVAEVAREELRKTKEEAEQAKAGASTMESRLLAAQKEIEAAKASERLALAAIKALQESESARDTNNADSPAGVTLSLEEYYELSKCAHEAEEQANLRVAAALSQIEVAKESESRSVEKLEEVTQEMATRKEALKIAMEKAEKAKDGKLGVEQELRKWRAEHEQRRKAGDTSIGLMNPIRSPRASFEGKNEPSNLVSASEATGTDPSISTSPKGNMQRSFTTLDSFSEAKAPKKKKRSFFPRILMFLARKKTQPNKTS 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23218259 23223955 - Lsi04G015670.1 Lsi04g01567 661616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01567 934 Coils Coil 779 820 - -
Lsi04g01567 934 MobiDBLite consensus disorder prediction 836 911 - -
Lsi04g01567 934 Coils Coil 302 371 - -
Lsi04g01567 934 Coils Coil 486 537 - -
Lsi04g01567 934 MobiDBLite consensus disorder prediction 1 180 - -
Lsi04g01567 934 Coils Coil 666 721 - -
Lsi04g01567 934 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 174 929 - -
Lsi04g01567 934 MobiDBLite consensus disorder prediction 8 50 - -
Lsi04g01567 934 MobiDBLite consensus disorder prediction 546 568 - -
Lsi04g01567 934 PANTHER PROTEIN WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 174 929 - -
Lsi04g01567 934 MobiDBLite consensus disorder prediction 863 902 - -
Lsi04g01567 934 MobiDBLite consensus disorder prediction 98 119 - -
Lsi04g01567 934 Pfam Weak chloroplast movement under blue light 273 841 IPR008545 -
Lsi04g01567 934 Coils Coil 440 460 - -
Lsi04g01567 934 Coils Coil 631 651 - -
Lsi04g01567 934 MobiDBLite consensus disorder prediction 64 87 - -
Lsi04g01567 934 Coils Coil 568 623 - -
Lsi04g01567 934 Coils Coil 412 432 - -
Lsi04g01567 934 MobiDBLite consensus disorder prediction 144 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01567 - - - bhj:120085678 1583.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01567 Lsi08g01470 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01603 Lsi-Chr1:14310135 Lsi04g01567 Lsi-Chr4:23218259 4.23E-07 dispersed
Lsi03g02268 Lsi-Chr3:33596474 Lsi04g01567 Lsi-Chr4:23218259 2.92E-11 dispersed
Lsi02g01166 Lsi-Chr2:14230152 Lsi04g01567 Lsi-Chr4:23218259 1.89E-16 transposed
Lsi03g00426 Lsi-Chr3:4814939 Lsi04g01567 Lsi-Chr4:23218259 3.18E-08 transposed
Lsi05g00504 Lsi-Chr5:6332414 Lsi04g01567 Lsi-Chr4:23218259 2.94E-35 transposed
Lsi04g01567 Lsi-Chr4:23218259 Lsi08g01470 Lsi-Chr8:22838986 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g771 Blo01g01532 Blo12g00955 . Bda03g00215 Bpe02g00424 . Bma04g00166 Bma01g02280 Cmo05g00186 Cmo12g00494 Cma01g01843 Cma09g00225 Car01g01437 Car12g00505 . Cpe06g00157 Cpe07g00482 Bhi04g00346 . . . Hepe08g1277 . Lcy13g2069 Cla08g01568 Cam08g2065 . Cco08g1776 Clacu08g1751 . Cre08g1537 Cone4ag1570 Cone7ag1382 . Cone20ag0189 Lsi04g01567 Csa04g02403 . Cme03g02043 Blo17g00856 . Bda08g01354 Bda01g01611 . Bpe05g00049 Bma01g00652 Bma05g00073 . Cmo01g01902 Cmo09g00217 Cma12g00549 Cma05g00187 Car05g00157 Car09g00193 Cpe11g00153 Cpe02g00177 Bhi09g03333 Tan01g4801 . . . . . Cla05g02035 Cam05g2185 Cec05g2201 Cco05g2247 Clacu05g2177 Cmu05g2044 Cre05g2172 Lsi08g01470 Csa02g01963 Chy07g00127 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002882 4 2 4 10 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 2 1 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01567 Lsi_Chr04 FPKM 16.836258 17.797144 18.676432 15.859974 12.590331 12.831198 17.717382 1.854885 1.401187 1.157599