Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01573 ATGAACTCCAATCAGAAGCAGAAGACAGCAGAGAAAGTTGCAGAGTACAAGCAAGAAACAGAGAAGTTTAAGGTTGAAGAAAGAGAAAGCCAACAACCAATTCCAGAGTCATCATCTACTTCCCCTCTTCTTCCTTCAGCTTCCTCTTCTCCTTCACATGAATTCTCCTTTACAATCTCTCTCCATTCTTCCTCTTCTGATAAAACCAAACCCACTCCTCCTTCCTTTGCCATTGACTTGTCTCCTGCAGATGACATCTTCTTCCATGGCCACTTGCTTCCCCTTCATCTCCTCTCCCACCTTCCTTCTTCGCCTCGCTCCTCCACCAATTCCATGGACAGCTTTACCATCCCAATCAAAGAGATTTGGGACAGTGAAGAGCCCCTCAAAGACAGCTCAAGTTGTAGCACCAGCAGCACCAAGCACCAGGAAACTGAACCTACTGAAACAGGTGGGAGAACCAAATCCAAGCCTTTCTCATTGTTTGGATTTGCGAAATGGCGAAAAGGGTGCGAGATTACCGAGCAAGATGATAAAGCAAAGCACAAGAGGAAGCTGGGGTTTGATGTTAGTCAAGTTCTAAAACGGTATGCAAGAGTGGTCAGACCATTATTGTTCTTCAGATGGAGGAAAGAGAACTTGCACATTCGTCGCCAAGCTTATTCATTTTCGGGGAATTTAAATCCGCGAAACAAGCAAGAATTGAGAGGAAGAAGAGGAGAATTCTCAGCACCAGCATCCATGAGGACATCCCCAACAAATAGCGGCCTTCTCGTAGCAACTCCATCTATGACTTCTTCTACAAGTGATAGCACCATGGAAGAGTTGCAGTCTGCAATTCAAGCTGCCATTGCTCACTGTAAGAACTCCATTGCTAAAGAAGATAAAACCAATGTCAAGAGCTGA 906 45.03 MNSNQKQKTAEKVAEYKQETEKFKVEERESQQPIPESSSTSPLLPSASSSPSHEFSFTISLHSSSSDKTKPTPPSFAIDLSPADDIFFHGHLLPLHLLSHLPSSPRSSTNSMDSFTIPIKEIWDSEEPLKDSSSCSTSSTKHQETEPTETGGRTKSKPFSLFGFAKWRKGCEITEQDDKAKHKRKLGFDVSQVLKRYARVVRPLLFFRWRKENLHIRRQAYSFSGNLNPRNKQELRGRRGEFSAPASMRTSPTNSGLLVATPSMTSSTSDSTMEELQSAIQAAIAHCKNSIAKEDKTNVKS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23316438 23317343 - Lsi04G015730.1 Lsi04g01573 661622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01573 301 MobiDBLite consensus disorder prediction 127 157 - -
Lsi04g01573 301 PANTHER BRI1 KINASE INHIBITOR 1 22 298 - -
Lsi04g01573 301 MobiDBLite consensus disorder prediction 246 269 - -
Lsi04g01573 301 MobiDBLite consensus disorder prediction 10 31 - -
Lsi04g01573 301 MobiDBLite consensus disorder prediction 32 55 - -
Lsi04g01573 301 Coils Coil 6 26 - -
Lsi04g01573 301 MobiDBLite consensus disorder prediction 1 55 - -
Lsi04g01573 301 MobiDBLite consensus disorder prediction 242 269 - -
Lsi04g01573 301 MobiDBLite consensus disorder prediction 129 145 - -
Lsi04g01573 301 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 4-RELATED 22 298 IPR039620 GO:0005886|GO:0019210
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01573 K14499 BKI1; BRI1 kinase inhibitor 1 - csv:105435299 471.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01573 Lsi08g01458 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01436 Lsi-Chr5:22260095 Lsi04g01573 Lsi-Chr4:23316438 3.71E-08 dispersed
Lsi09g01336 Lsi-Chr9:21295561 Lsi04g01573 Lsi-Chr4:23316438 3.84E-08 dispersed
Lsi04g01573 Lsi-Chr4:23316438 Lsi08g01458 Lsi-Chr8:22733274 1.63E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g779 Blo01g01535 . Bda01g00563 Bda03g00217 Bpe02g00422 Bpe04g00183 Bma04g00169 Bma01g02285 Cmo05g00190 Cmo12g00472 Cma01g01848 Cma09g00219 Car01g01441 . Sed11g0971 Cpe06g00153 Cpe07g00472 Bhi04g00333 Tan02g1873 Cmetu03g0721 . Hepe10g0719 . Lcy13g2047 Cla08g01555 Cam08g2050 Cec08g1627 Cco08g1759 Clacu08g1736 . Cre08g1521 . . Cone17ag0841 Cone20ag0185 Lsi04g01573 Csa04g02397 . Cme03g02022 . . . . . . . . Sed01g2653 Cmo01g01909 Cmo09g00212 . Cma05g00191 Car05g00161 Car09g00188 Cpe11g00160 Cpe02g00173 Bhi09g03335 Tan01g4808 Cmetu07g0046 . Hepe01g1749 Mch11g0275 . Cla05g02029 Cam05g2180 Cec05g2195 Cco05g2242 Clacu05g2172 Cmu05g2040 Cre05g2167 Lsi08g01458 Csa02g01980 Chy07g00122 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001948 2 2 1 2 2 2 4 2 2 2 2 2 3 2 1 4 2 2 4 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01573 Lsi_Chr04 FPKM 1.626193 2.130801 2.090498 2.816287 3.96622 3.522376 4.569883 2.377167 2.359571 2.655562