Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01574 ATGTCCACGAGGAGTGAACATCATACAGTCCCGCTCTCTGTGCTCCTGAAGCGTGAATTGGCGATTGAGAAGATTGAGAGACCGGAAATCTTACATGGTCAGGCGAGTCAGAGTAAGAAAGGGGAGGATTTTACATTACTAAAGACGGAATGCGAGAGAGTGGTCGGAGATGGAGTCTCAACGTATTCGGTTTTTGGGCTTTTTGATGGACATAATGGATCTGCTGCTGCTATATATGCTAAGGAGAATTTGTTGAACAATGTTTTAGCTGCTATTCCATCAGATCTCAATAGAGACGAATGGATTGCAGCATTGCCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACGGACAAAGATTTTCAAGAGAAAGCACAAACATCAGGAACCACCGTCACCTTCATGATCATTGAGGGATGGGTTCTCACTGTTGCTTCCGTCGGTGATTCCCGTTGCACTTTAGAATCAGCTGAAGGTGACATCTACTACTTATCAGCAGATCATAGACTAGAATGCAACGAAGAAGAGAGAGAACGTATAATTGCTAGTGGTGGTGAGGTGGGTCGGCTGAATACTGGTGGTGGTGCAGAGATCGGTCCATTGAGATGCTGGCCTGGTGGCTTGTGTCTATCACGATCGATTGGTGATATGGATGTTGGCGAGTTTATAGTGCCTGTTCCCTACGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATTATTTCAAGTGATGGTGTTTGGGATGCTTTATCAGCTGAAACTGCCTTTGATTGTTGTCGGGGGATGCCAGTAGAAACTGCTGCTGCACAGATTGTGAAAGAAGCAGTACAATCAAAGGGACTTCGAGATGATACTACATGTATTGTGATTGACGTATTACCTAGGGAGAAACCATCTACTGCTTTGCCGCCACCGAAGAAGCAGGTAAAAGGAATGTTTAAATCAATGTTCCGCAAAAAGTCTTCTGAATCATCTTCTCATTTTGAGAAAGAATATAATGAGCCAGATGTTGTCGAGGAATTGTTTGAGGAAGGATCGGCTATGCTGGCAGAAAGGTTAGATGCCAAGTATCCTATCTGCAACATGTTTAAGCTGTTTGTATGTGCAGTATGCCAAATTGAGATCCAACCTCGGGAGGGTGTCTCCATATATGCCGGCTCATCTAACAGAGGAAAATTGCGTGCTTGGGATGGACCTTTTCTATGCTTAAGTTGCACAGAGAAGAAAGAAGCTATGGAAGGGAAAAGACCATCTGGAGAGTTGATTGTGATCTTGGAAATGGCCAGTCTTAGAAATTGTTCAGAGTTGACCTTCATCTCAGAAATGGACCCTTCTCGGAGGAGATGCCTGTTAGAGTTGATTGCTTTTGGATACTGTTTTCTGACATCGGTTTATGATTGA 1404 44.09 MSTRSEHHTVPLSVLLKRELAIEKIERPEILHGQASQSKKGEDFTLLKTECERVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLAAIPSDLNRDEWIAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMIIEGWVLTVASVGDSRCTLESAEGDIYYLSADHRLECNEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSSTGGRVIISSDGVWDALSAETAFDCCRGMPVETAAAQIVKEAVQSKGLRDDTTCIVIDVLPREKPSTALPPPKKQVKGMFKSMFRKKSSESSSHFEKEYNEPDVVEELFEEGSAMLAERLDAKYPICNMFKLFVCAVCQIEIQPREGVSIYAGSSNRGKLRAWDGPFLCLSCTEKKEAMEGKRPSGELIVILEMASLRNCSELTFISEMDPSRRRCLLELIAFGYCFLTSVYD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23320553 23325227 - Lsi04G015740.1 Lsi04g01574 661623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01574 467 CDD PP2Cc 39 293 IPR001932 -
Lsi04g01574 467 ProSiteProfiles PPM-type phosphatase domain profile. 31 293 IPR001932 -
Lsi04g01574 467 SUPERFAMILY PP2C-like 38 293 IPR036457 -
Lsi04g01574 467 SMART PP2C_4 26 291 IPR001932 -
Lsi04g01574 467 SMART PP2C_SIG_2 46 293 IPR001932 -
Lsi04g01574 467 Pfam Protein phosphatase 2C 54 278 IPR001932 -
Lsi04g01574 467 Gene3D - 32 301 IPR036457 -
Lsi04g01574 467 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 423 - -
Lsi04g01574 467 PANTHER ALPHABET, ISOFORM E-RELATED 2 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01574 Lsi-Chr4:23320553 Lsi06g00071 Lsi-Chr6:628499 2.51E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01574 - - bhj:120085570 835.869