Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01575 ATGAAGGTTCTTGTAACTGGGGCGTCTGGGTATCTGGGCGGAAGGCTGTGCCGTGCATTATTGAATCGAGGCTTCTCCGTTCGGGCTTTGGTCCGTCCGACCAGCGACCTTTCTGCTCTTCCTCATGATCCTTCTGCTCTTGAGCTCGTTCATGGTGATATCACCGACTACCAGTCGCTTCTAGAGGCATGCTCCGGCTGCCATGTCGTCTTCCACGCGGCTGCAATGGTCGAGCCATGGCTTCCTGATCCATCGAAATTCATCTCTGTCAATGTACGAGGGTTGGAGAACGTGTTGCAAGCGGTTAGAGAGACGAAGACAATCGAGAAGATTATCTATACGTCGTCCTTTTTCGCGCTTGGTTCAACCGATGGATATGTTGCCGATGAAAAACAGGTTCACCACGAAAAGTTCTTTTGTACGGAGTACGAGAAATCGAAGGCCATTGCTGACAAGATTGCATTGCAAGCTGCATCTGAGGGCATTCCGATAGTGCCGGTTTATCCCGGAGTTATCTATGGTGCTGGAAAAGTCACGGCTGGGAATGTTATTGCCCGCATGCTGATTGAACGGTTCAATGGGCGATTACCCGGATATTTAGGCCAAGGAAACGATAAGTATTCTTTTAGCCATGTCGATGATGTGGTAGAAGGGCATATTGCAGCAATGCATAAAGGTCGTGTAGGCGAAAGATATCTTCTAACAGGAGAAAATGCATCATTTATGGACGTTTTTGACACAGCTGCAGCCATTACCGGTACAAGAAAACCAATCTTTAACATTCCATTGTGGTTAATTGAAGCCTATGGCTGGGTTTCAGTTTTGATCTCTCGCATCACAGGGAAACTTCCTCTCATCAGCCCCCCGACTGTGAAGGTTTTGAGACATCAGTGGGCATATTCTTGTGACAAGGCAAAACAAGAACTGGATTATAACCCCAGAAGTTTAAAAGAAGGATTAGAAGAGATGCTACCATGGCTAAAGAGCTTGGGTTTGATAAAATATTAA 1008 46.63 MKVLVTGASGYLGGRLCRALLNRGFSVRALVRPTSDLSALPHDPSALELVHGDITDYQSLLEACSGCHVVFHAAAMVEPWLPDPSKFISVNVRGLENVLQAVRETKTIEKIIYTSSFFALGSTDGYVADEKQVHHEKFFCTEYEKSKAIADKIALQAASEGIPIVPVYPGVIYGAGKVTAGNVIARMLIERFNGRLPGYLGQGNDKYSFSHVDDVVEGHIAAMHKGRVGERYLLTGENASFMDVFDTAAAITGTRKPIFNIPLWLIEAYGWVSVLISRITGKLPLISPPTVKVLRHQWAYSCDKAKQELDYNPRSLKEGLEEMLPWLKSLGLIKY 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23330314 23333769 - Lsi04G015750.1 Lsi04g01575 661624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01575 335 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 335 - -
Lsi04g01575 335 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 335 - -
Lsi04g01575 335 Pfam NAD dependent epimerase/dehydratase family 3 232 IPR001509 -
Lsi04g01575 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 331 IPR036291 -
Lsi04g01575 335 Gene3D - 1 334 - -
Lsi04g01575 335 CDD AR_FR_like_1_SDR_e 3 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01575 K15891 FLDH; NAD+-dependent farnesol dehydrogenase [EC:1.1.1.354] - csv:101223178 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01575 Lsi-Chr4:23330314 Lsi10g00278 Lsi-Chr10:4455691 1.62E-19 dispersed
Lsi05g00258 Lsi-Chr5:3285706 Lsi04g01575 Lsi-Chr4:23330314 7.94E-08 dispersed
Lsi04g01575 Lsi-Chr4:23330314 Lsi03g01266 Lsi-Chr3:23357447 1.75E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g782 . Blo12g00951 . Bda03g00219 . Bpe04g00185 Bma04g00172 . . . Cma01g01850 . Car01g01443 . . . . . . . . . . . . . . . . . . . . Cone17ag0837 . Lsi04g01575 Csa04g02395 . . . . . . . . . . Sed13g1732 Cmo01g01911 . . . . . . Cpe02g00171 Bhi09g03340 Tan01g4810 Cmetu07g1953 . Hepe01g1747 Mch11g0273 . Cla05g02028 Cam05g2179 Cec05g2194 Cco05g2241 Clacu05g2171 Cmu05g2039 Cre05g2166 . . Chy07g00120 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013934 1 1 1 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01575 Lsi_Chr04 FPKM 23.834864 26.3218 45.632584 45.133427 13.689467 13.065386 15.133251 29.797827 25.584755 28.262703