Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01578 ATGGCTGCAGATTCGAACAGCACAGAGCTGGATCTCGAGCTTCTTCCTTATCTTCGACTCTACAAAAACGGCGTCGTCGAGAGGCTTCTAGGGACACGTGTCACTCCCCCTGGGCTTGATACTCGAACAGGAGTTGAATCTAAAGACATCATTATTGTCCCTGAAACTGGTGTCTCGGCTCGACTTTACCGTCCGACCGCCGTTGACCCTCCCCGGAAACTTCCCTTGGTTGTTTACTTTCACGGTGGTGCGTTTCTCGTAGCCTCCAGTGCTGAACCTATCTACCATAACAACTGTCTCATCCCGCTTGTCGCTGAGGCCCAAACCGTCCTGCTTTCGGTGAACTACAGATTAGCGCCGGAGCATCCTCTCCCTGCTGCTTACGACGATTCTTGGGCGGCGCTGCAGTGGATTACCGCCCAGTCCCAGTCCTCCGCCGACGAGCCCGGCCATGAGCCTTGGCTTAAAGAGCTAGTGTTCTTGGTAGGTGACAGTGCGGGCGGAAACATCTCACACCATATGGCTCTGCAAGCCAAAAACTCGGATCTGACAACCAAAATCAAAATTGAAGGAATCGCTCTAATTCAACCATACTTCTGGGGACAGGAGCCCATCGGATCGGAGATCACAGAGCATCACAAAAAAGCTGAGGTGGATCGTTGGTGGAATTTCGTCTGCCCTTCGGACAGAGGAAACGATGATCCCCTCATCAACCCCTTCTCCGACGGGTCACCAGCAATCGATGGGCTTGTCGGGGATAAGGTGGTGGTAATCGTTGCGGGGAAGGATATCCTGAGGGACAGAGGGAAGCTTTACTATGAAAATCTGGCAAAGAGTGAATGGAAAGGAAAGGTGGAGATTTATGAGACGGAAGGTGAGAATCATGCATTTCATATGTTAGATCCCACTTCCGAGAAAGCCAAGGCCCTTACCAAACGTTTGGCTTTCTTCCTAAATGAGATTAAACATTCCAAATTGTTCTGTTTTAGCTGCGAAACCGACGGATTATAA 1011 50.64 MAADSNSTELDLELLPYLRLYKNGVVERLLGTRVTPPGLDTRTGVESKDIIIVPETGVSARLYRPTAVDPPRKLPLVVYFHGGAFLVASSAEPIYHNNCLIPLVAEAQTVLLSVNYRLAPEHPLPAAYDDSWAALQWITAQSQSSADEPGHEPWLKELVFLVGDSAGGNISHHMALQAKNSDLTTKIKIEGIALIQPYFWGQEPIGSEITEHHKKAEVDRWWNFVCPSDRGNDDPLINPFSDGSPAIDGLVGDKVVVIVAGKDILRDRGKLYYENLAKSEWKGKVEIYETEGENHAFHMLDPTSEKAKALTKRLAFFLNEIKHSKLFCFSCETDGL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23346155 23348455 + Lsi04G015780.1 Lsi04g01578 661627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01578 336 Pfam alpha/beta hydrolase fold 77 299 IPR013094 GO:0016787
Lsi04g01578 336 SUPERFAMILY alpha/beta-Hydrolases 14 320 IPR029058 -
Lsi04g01578 336 PANTHER ARYLACETAMIDE DEACETYLASE 8 319 - -
Lsi04g01578 336 Gene3D alpha/beta hydrolase 20 326 IPR029058 -
Lsi04g01578 336 PANTHER PUTATIVE-RELATED 8 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01578 - - - csv:101222945 579.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01578 Lsi-Chr4:23346155 Lsi10g00291 Lsi-Chr10:4723396 1.13E-91 dispersed
Lsi06g00589 Lsi-Chr6:8017824 Lsi04g01578 Lsi-Chr4:23346155 3.05E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g788 . . . Bda03g00220 . Bpe04g00187 Bma04g00174 . Cmo05g00198 . Cma01g01853 . Car01g01446 . . . . Bhi04g00320 Tan02g1885 Cmetu03g1045 . Hepe10g0710 . Lcy13g2039 Cla08g01546 Cam08g2041 Cec08g1619 Cco08g1752 Clacu08g1729 . Cre08g1513 . . . Cone20ag0177 Lsi04g01578 Csa04g02391 . Cme03g02012 . Blo18g00834 . . Bpe02g01879 Bpe05g00363 Bma01g00706 . Sed13g1729 Cmo01g01914 . . Cma05g00200 . . . Cpe02g00169 Bhi09g03344 Tan01g4814 Cmetu07g1031 . Hepe01g1744 Mch11g0271 . . . . . . . . . Csa02g01990 Chy07g00118 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002740 1 2 0 1 1 2 1 2 1 2 1 1 3 2 2 2 1 6 2 2 2 2 2 3 2 1 2 2 3 3 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01578 Lsi_Chr04 FPKM 15.510292 18.164051 9.494083 7.646441 15.822086 16.06831 15.655343 10.54004 13.360866 9.296538