Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01580 ATGGGGACAAATGTAATTACAAATCTCAATCTGTATAAGTACGAAAAATTACCGTCCAGTTTGTTTGAGCATGTCAAGCATATTGGTCTGGAATACATGATCAACAGCTTCGACACTAACACCCGTACCACTTTGCGGCATAGCAAATACATCGACCACGCGCACGATTGTGAACACATCCGAAAGAATAAGAGCCGAAGAAACAAGAAAAGTGGAAACTTCAATTCGAACTGTACCGTGCTTAAGCATCTTCAGAAGCGCGAGCGAGGAGATACCTGCTCCGACGAATCAAGAGTGGGCGAGTCCGGCGGCGGATGCCCCAATGAACCTCCGGCACCGGCGAACATTCTCTGTAGCCGCTCCATTCGTAAAGTTTTCCCTCAGCGTCGATCTTTCCGGTTGCCGGACATGCAAGACTTGAACTTTCTTTCTCAACAAGACTTCTGTCGTCTGAAATTTTGTTTGAATAAGAATTGGGAAGTAGATATCTTCAAGTCTAACGAAATTATGCTTCGTGCTTGGGCAAGAAGTCGGTGTTCTCATCGTTTGATTCATCTTCGTCGTTTCTCATCGGCGTCTTCATCTTCTACTGCACAGAAATCAATCGAGGGTTCGAACAATCTCCAGAATTCGCATCTAGTCTCGCCACCGGCTCCGATTTTGCAGCGCCCACAGAACAGTTTATTGCCTAGTGCATCACCCGCTTCTTTTTCTCGCAGTTCGGTTATAACTGTCTCCGCTGCTGTTGTTTCTGCTCTAGTCGCTTCCATTGCTCTTCTTACCTCTGACAGTCGGTCTGATCGCCCCCAGGAGAGTCATAGTTCCTTTTATGATGGGATTGAAGGGGCGGCTCAGAGATCTAGCGATTCATTTAAGAAGATTTTTCATCACATTAAACAAACTGGCGTTGCCGCCTCGGTTCTCTGGCAGTCGTTAAGGTCGGTGATGTCGTCGGCCAATCATGAGGTCCGGTCCGGTTTTGAACTCAGGGTAGCGGCATTGCTGGCTGACATTGCTGCAGCCAATGCCAGCCGTAGGGCAGCGCTCGTCGGGGCCGGAGGCGGTGCTGTGGTAGATTGGTTGCTCGAGTCGGTGGCGGTTCCTCGGGATGGATGTGGAACTCAGGCAGAATCCGCCAGAGCGCTGGCCTACTTGATTGCTGATCCTGACGTGTCTGCTTCCGTCCTTGGAAGGCCTCGTGCTGTTCCAAATCTTTTGAGATTCATCTTCTCGTGTCAGCCTCGGCGAACGAAGCAGGCCTACATTGAAGTTTTAGTACTTGAGACAAATACCATAAATCTTACATTGAAGTTACAAAATACGGTGAGTTTCTTTTCTGATGCAGTTGACTACCATCATTTAATCATAGATAGTGAGAATCTTTTCAATACCTTATTTGTTTTACCTTTTGTCATACATACTAAAAGCCGCCTAGTAAATTCACAATTGTCTTCCCATAAAATGGCTAGAAAGCGGATTTTGAGGGTAATCGTACACGTGGGATCAGAACACATGTTAGAATCTGAGTTAGAAAGCGGATTCAGTTCTGATTTTGATGATATTTCCCCCCTTAAGTCTTGTTTTCCCATTGATATTTGTCACATTTTTGTGGGACAGCATCCAAGACGTAGTTCATTCGATATTTCTGATTCTTTGAAAGGTAGGAGCATGCTCGTGGCTGCCATCATGGATATTGTAACGTCCAATTGTGATAGGTTAGAGAAGTTAGCTATTGAGCCATCATTGCCTGCGCATGCTGAAACTAGAGATATTGCAGCAGCTATTCAAGTTATTGAGGAAGGTGGTTTGGAATTTGATGAACCAAATGGCGGTGAAGATGAAGATGGTGGAAGAGGAATCAAAGGAATAGGAATTAAGATTCTTGGAGGCACTACTGTTCTGGGACTTTCGAGAATAAGTGGGTTTGTGAAGTTGGCATATTCTGATGTTGGTCATATAGAACTGGTAAAAAATACACCTAAAAGTTCAGTATCAGAAAAGCATGATAGCTCACTCGTAGCTAATTCTTCTGTTGTTCCTGGTCTGTGGGATGATTTGCATTGTGAGCATGTTGCTGTACCTTTTGCAGCTTGGGCGTTGGCAAATTGGTCAATGGCATCAGAACTGAATAGATTGCACATCCATGAACTAGATCAAGACGGACATGCTGTTATGACTGCTTTAATGGCACCTGAAAGGTCGGTGAAATGGCATGGAAGTTTGGTAGCTAGGCTTTTACTAGAGGACCATAATCTCCCCTTAAATGATTATGTTTCTGATTGGAGCTCAAGCCTTCTTTCTACTGTTTCTCATGCAAGTAAAAATGATGACATCCCTTTGGCTCAGGCTGCTTTGTCTGCTTTTTTGGCTTCTGTTGAACGGTTCCCTGAGGCACAAAAGAAAATAATGGAGAGGGGTCTGCATCTACTGAGAGATGCTGCTATACGGACCCAAAAACATGGAGAGGTTCAAGAAGCATTAGCAAAGGCATTAGAGTTACTCAGCACTGGATGGATGCATCTATCAGCTGAAGAGAGTCAGAGATGGTCTGCTATATTACTTCAATGGGTCTTTGGCAAATTTTCCTCTGAATCTTTGAGGTCTTCTGCAACGAAAATTTTATCTTGCATTCTTGAAGATTACGGACCAAGCTCCATACCTATTTCTCAAGGATGGTTGGCTATACTGCTGACTGAAATACTAGGTTCTACTAAGAAGCCTGCAGTGAATGGAGCTACGCAGCTTAAAAATGACAAAGTGAAGACTAGAATTGAGCAGTCGAACATTGTTTTTGCCAGTCAAGTTGCTAGTCAGCTAGCTGCTGCTGTTGTTAACCTGGCGGTACACCAGTTTGGTGCAACTACTGATTTATTAGATACCTCTCCGTTGGCAGATTTACTTTCACGTGAACCTTTTGTAGCACCTTTAAAGAATATAAAAAAAGAGAATGGTCAAAAGTTTGATGCAGCTGATTCTGCAATGGCAACGTTAAAGGGGATTAAAGCACTGACTGAAGTTTGTGCAGATGATTCTTCATGTCAGAGCAGAATAGCTGATTTTGGCGTTCTCTTTTTGCTGAGACGCCTTTTGTTATGTGATGATTATGAGAAGCTGGCAGCCATGGAAGCATATGATGCATCTAGAGCTCTTGAGGCTCAAGAACGTGTTTCAAATGCCTCTGGGGAATCATCACTTTCAGAGAAGAAGAATGACTCGTCTAGTGTCCGAGTACCCCCCACGGCTCACATCCGTAGGCATGCTGCTCGACTTTTAACCATCCTCTCACTTCTAGAGAAAGTCCAGAAGGAGATTCTCTCTGATGAAGAATTTTGTAGATGGCTTGAGGACTGTGCCAATGGGGCCATTCCTGGTTGCCATGATGCTAAATTGCAAAGTTATGCTAGAGCCACACTATTAAATATATTTTGTATTAACCGTAGAGCTTCTGAAAATGCTTCTCTCTCTGATACTGAGTCTACAAACAGGAAGAAGAATTGCCCCCGTTATGATGATATGATTTTTTTAATAAATCCCGAACTTCCTCACTGGAAGGTTCATGAAGAAAAGGAGCAGGATACTGTTCAAAAGGATGAATCTTCTCTTTCACAGGCTAATCTCATTGATATTGATGGTGTAGCTATGGCAAGGCATGGAAATGATAACTACACCTCTTCATCTCATACGTCTCAGAATGATTCTAGGCCAGACTCTCCTTTGGTAGATGTTGTTTTTATTCATGGCCTCCGAGGTGGACCTTACAAGTCATGGCGCATATCTGAGGACAAATCCTCAACAAAATCTGGACTGGTAGAGAAGATTGATCAGGAGGCAGGGAAACTAGGGACGTTTTGGCCAGGTGAATGGCTTTCATCTGACTTCCCAAGGGCTCAAACTTCAGTTGCAAACTTGAAAATTATCTGTACATCTAAAAGATCTGCTTTTACAAATCTTGTGCAGACAAATCTCACTCAGTGGTCTGGGGCTAGCCTTCCTCTTCAGGAAGTCAGCTCCATGCTACTGGATAAGCTTGTTGCTGCTGGAATTGGGGATCGACCTGTTGTATTTGTTACTCACAGGCGCCAGCAATCAGTCATATCTTTTAGTTCTGATTCTGATTTATCTATGCAGCATTATTTATTCATCATTATTAATTCTTGTCCTATGCTTTGCTTATGTGACAGAAACCCTCTAACCAAATGCAACCTTTATGTTTGCAGCATGGGAGGGCTAGTTGTCAAGCAAATGTTGTATAAAGCCAAGACAGAAAATATTGATAACCTTGTGAAGAATACTGTGGGAGTTGTCTTCTATAGCTGCCCACATTTTGGAAGCAAACTAGCAGACATGCCTTGGCGAATGGGTCTTGTATTCCGCCCTACTCCCACTATAGGAGAGCTGAGAAGTGGGTCTCCTAGATTGGTGGAGCTGAACGATTTTCTCCGTCACCTTCATAAGAAAGGACTGCTTGAGACGAAGGTGACCCCAATTGTTGAAGGTTATGGAGGATGGGCTTTCCGAATGGAAATTGTTCCTATTGAATCCGCATATCCTGGCTTCGGCGAACTAGTTGTGTTAGAATCAACTGATCACATAAATTCGTGTAAGCCCCTCAGCCGCACTGACCCTTCATACACTGAGACATTGGAATTTTTACAGAAGTTGAAATCTCGCTATTCTTAG 4680 43.7 MGTNVITNLNLYKYEKLPSSLFEHVKHIGLEYMINSFDTNTRTTLRHSKYIDHAHDCEHIRKNKSRRNKKSGNFNSNCTVLKHLQKRERGDTCSDESRVGESGGGCPNEPPAPANILCSRSIRKVFPQRRSFRLPDMQDLNFLSQQDFCRLKFCLNKNWEVDIFKSNEIMLRAWARSRCSHRLIHLRRFSSASSSSTAQKSIEGSNNLQNSHLVSPPAPILQRPQNSLLPSASPASFSRSSVITVSAAVVSALVASIALLTSDSRSDRPQESHSSFYDGIEGAAQRSSDSFKKIFHHIKQTGVAASVLWQSLRSVMSSANHEVRSGFELRVAALLADIAAANASRRAALVGAGGGAVVDWLLESVAVPRDGCGTQAESARALAYLIADPDVSASVLGRPRAVPNLLRFIFSCQPRRTKQAYIEVLVLETNTINLTLKLQNTVSFFSDAVDYHHLIIDSENLFNTLFVLPFVIHTKSRLVNSQLSSHKMARKRILRVIVHVGSEHMLESELESGFSSDFDDISPLKSCFPIDICHIFVGQHPRRSSFDISDSLKGRSMLVAAIMDIVTSNCDRLEKLAIEPSLPAHAETRDIAAAIQVIEEGGLEFDEPNGGEDEDGGRGIKGIGIKILGGTTVLGLSRISGFVKLAYSDVGHIELVKNTPKSSVSEKHDSSLVANSSVVPGLWDDLHCEHVAVPFAAWALANWSMASELNRLHIHELDQDGHAVMTALMAPERSVKWHGSLVARLLLEDHNLPLNDYVSDWSSSLLSTVSHASKNDDIPLAQAALSAFLASVERFPEAQKKIMERGLHLLRDAAIRTQKHGEVQEALAKALELLSTGWMHLSAEESQRWSAILLQWVFGKFSSESLRSSATKILSCILEDYGPSSIPISQGWLAILLTEILGSTKKPAVNGATQLKNDKVKTRIEQSNIVFASQVASQLAAAVVNLAVHQFGATTDLLDTSPLADLLSREPFVAPLKNIKKENGQKFDAADSAMATLKGIKALTEVCADDSSCQSRIADFGVLFLLRRLLLCDDYEKLAAMEAYDASRALEAQERVSNASGESSLSEKKNDSSSVRVPPTAHIRRHAARLLTILSLLEKVQKEILSDEEFCRWLEDCANGAIPGCHDAKLQSYARATLLNIFCINRRASENASLSDTESTNRKKNCPRYDDMIFLINPELPHWKVHEEKEQDTVQKDESSLSQANLIDIDGVAMARHGNDNYTSSSHTSQNDSRPDSPLVDVVFIHGLRGGPYKSWRISEDKSSTKSGLVEKIDQEAGKLGTFWPGEWLSSDFPRAQTSVANLKIICTSKRSAFTNLVQTNLTQWSGASLPLQEVSSMLLDKLVAAGIGDRPVVFVTHRRQQSVISFSSDSDLSMQHYLFIIINSCPMLCLCDRNPLTKCNLYVCSMGGLVVKQMLYKAKTENIDNLVKNTVGVVFYSCPHFGSKLADMPWRMGLVFRPTPTIGELRSGSPRLVELNDFLRHLHKKGLLETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVLESTDHINSCKPLSRTDPSYTETLEFLQKLKSRYS 1559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23350571 23360086 + Lsi04G015800.1 Lsi04g01580 661629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01580 1559 SUPERFAMILY alpha/beta-Hydrolases 1237 1536 IPR029058 -
Lsi04g01580 1559 MobiDBLite consensus disorder prediction 1217 1237 - -
Lsi04g01580 1559 MobiDBLite consensus disorder prediction 1055 1077 - -
Lsi04g01580 1559 MobiDBLite consensus disorder prediction 89 112 - -
Lsi04g01580 1559 MobiDBLite consensus disorder prediction 196 216 - -
Lsi04g01580 1559 SUPERFAMILY ARM repeat 694 1141 IPR016024 -
Lsi04g01580 1559 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 539 1359 - -
Lsi04g01580 1559 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1405 1557 - -
Lsi04g01580 1559 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 170 419 - -
Lsi04g01580 1559 MobiDBLite consensus disorder prediction 1218 1236 - -
Lsi04g01580 1559 MobiDBLite consensus disorder prediction 1055 1078 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01580 K23504 SERAC1; protein SERAC1 - csv:101222471 1657.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g809 . Blo12g00948 . Bda03g00222 . Bpe04g00189 Bma04g00176 . . . . Cma09g00214 . . . Cpe06g00149 . . . . . . . . . . . . . . . . . . Cone20ag0175 Lsi04g01580 Csa04g02389 . . . . . . . . . . . . Cmo09g00207 . . . Car09g00182 . . Bhi09g03347 . . . . . . Cla05g02022 Cam05g2172 Cec05g2188 Cco05g2236 Clacu05g2165 Cmu05g2033 Cre05g2161 . . Chy07g00115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005432 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01580 Lsi_Chr04 FPKM 6.59549 5.142823 3.436791 4.051966 3.546767 3.621831 3.590874 2.647804 3.003161 2.579429