Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01581 ATGACGCTGCCGGGGAGTGTATCGCTGCATTCTTTTGAACTAATGTCTTCAACTTTTGCTTCTGTTTCTTCCTCCTTCTCCTTTTTAGGTTCTTCGAGACCTTTGATTAATTGCACAAGTGTGACGACTCGGAAGATGAAATTCAGAAATGGAGGTGCTCTGAGGTTGTGCTGCTCGGATTCAAATCATTCTACTCCTTTGCCTTCCACGACTGCGACAAGCACGGGCCCTGCTCCTCCGGTGCTGAAGAGAAGGAAGAGATACAGGAGAGAGTATCCTGGAGAGAGCAAAGGCATTACTGAGGAGTTGAGGTTCGTCGCCATGAGGCTTCGCAATGTTAATGGTAAAAAATTATCTGGTGATGCTGTGGATTCATCCAGCGAAGATGAAGTAGAGGAGAAAGATGACGGAAATTTGGTGTTGAGTGACGATGATAATGATGAGAACGGGGATGGTACACAGACTTGGCAACCGAGCTTGGAAGGATTCCTTAAATATTTGGTTGATAGTAAGCTCGTCTTCAGCACTGTGGAGCAAATCGTTGATGAATCCAGCGACGTTGCTTATAGTTACTTCAGAAAATCAGGTTTGGAACGTTCAGAATGTCTTGCAAAGGATCTAGAATGGTTCAGCGAACAGGGTATTGTGATACCTGAGCCAACCACTCCAGGAGTTTCTTATGCCAAGTATCTGGAGGAACTTGCTGAGAGAAATGCCCCTTTATTCCTTTGCCATTACTATAATATATACTTTTCACATCTAGCAGGTGGGCAAGTGATAGCGAAACAGGTATCTGATAAAAAAGTTATCATGATTTATAATCTTTTTCCAAAGGTTTCTGAGAGACTCCTTGAAGGAAGAAGGCTTGAATTTTATACATGGGCAGGGGATGCAGAAGAATTGCTGAAAAATGTTCGTGAGAAGCTTAACATGCTTGGAGAGGCTGCTATGTTCGCACTAATGCAGCACTGGTCTCGGGATGAGAAAAATAAATGCTTGAGAGAAGCAACCAAGTCATTTCGCTTTTTGGGACAGATAGTTCGTTTGATCATCTCATGA 1059 43.34 MTLPGSVSLHSFELMSSTFASVSSSFSFLGSSRPLINCTSVTTRKMKFRNGGALRLCCSDSNHSTPLPSTTATSTGPAPPVLKRRKRYRREYPGESKGITEELRFVAMRLRNVNGKKLSGDAVDSSSEDEVEEKDDGNLVLSDDDNDENGDGTQTWQPSLEGFLKYLVDSKLVFSTVEQIVDESSDVAYSYFRKSGLERSECLAKDLEWFSEQGIVIPEPTTPGVSYAKYLEELAERNAPLFLCHYYNIYFSHLAGGQVIAKQVSDKKVIMIYNLFPKVSERLLEGRRLEFYTWAGDAEELLKNVREKLNMLGEAAMFALMQHWSRDEKNKCLREATKSFRFLGQIVRLIIS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23360779 23363646 + Lsi04G015810.1 Lsi04g01581 661630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01581 352 MobiDBLite consensus disorder prediction 125 150 - -
Lsi04g01581 352 Pfam Heme oxygenase 163 347 IPR016053 GO:0004392|GO:0006788
Lsi04g01581 352 MobiDBLite consensus disorder prediction 64 92 - -
Lsi04g01581 352 Coils Coil 295 315 - -
Lsi04g01581 352 MobiDBLite consensus disorder prediction 117 155 - -
Lsi04g01581 352 PANTHER INACTIVE HEME OXYGENASE 2, CHLOROPLASTIC-RELATED 6 352 - -
Lsi04g01581 352 SUPERFAMILY Heme oxygenase-like 155 350 IPR016084 -
Lsi04g01581 352 Gene3D - 131 351 IPR016084 -
Lsi04g01581 352 CDD HemeO 157 350 IPR002051 GO:0004392|GO:0006788
Lsi04g01581 352 PANTHER HEME OXYGENASE 1, CHLOROPLASTIC-RELATED 6 352 IPR016951 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01581 - - - bhj:120086178 560.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01581 Lsi-Chr4:23360779 Lsi06g00964 Lsi-Chr6:19565389 4.64E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g810 . . . . . . . . . . Cma01g01856 . Car01g01447 . . . . . . . . . . . . . . . . . . Cone4ag1560 Cone7ag1391 . . Lsi04g01581 Csa04g02388 . . . . Bda08g01328 . . . . Bma05g00095 . Cmo01g01917 . . . . . . . Bhi09g03350 . . . Hepe01g1742 Mch11g0268 . Cla05g02021 Cam05g2171 Cec05g2187 Cco05g2235 Clacu05g2164 Cmu05g2032 Cre05g2160 . . Chy07g00114 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001127 3 3 3 4 2 2 3 3 3 2 3 3 3 2 2 2 3 5 3 2 2 2 1 1 2 2 2 5 2 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01581 Lsi_Chr04 FPKM 2.083333 1.99792 2.194617 1.760535 0.856319 2.12089 1.503558 1.693749 1.978462 0.0