Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01587 ATGCTCTTAATATTACAATTTGCGATATGCTCTTACATCAAACAGTGTAAAACGGGAAGCAACTCAGCCACATCAAATGATTTTTCAAGAGGTCCAGCGTTAAATCTTATTCTTTATGCATGCGCGTATGCTCAGCCGGGCAACAAGCTCGCTTCAATGAGTCTCTGTGCTCTATTAGGACTTGTTCGCTTTTCTGCTCCATCCTCTTTTCTTATTTCCAATTCCAACGCCTTAAATAGAGTTTTCATCAACCGAGTCTCCACTGGAAGGAAGTTTCGGAGCTACAACACCATGGCTTCATCCATGTCTTCTTCGCCTAACATCAACAAACACGTCTCAGAAGTAGCAGAGCAGGAGCAGCTCCCCAAAATCACTGCGCCGTACGGCTCCTGGAAGTCCCCAATCACTGCTGACGTTGTTACTGGTGCGTCCAAGCGACTTGGTGGTACTGCTGTCGACGGCAATGGACACCTTATCTGGCTCGAATCACGGCCCACCGAATCAGGGCGGGGAGTGCTTGTTAAGGAATCGGAAAATCCAGGGAACGAGCCTAGTGATATTACTCCAAAGGACTTTTCAGTGCGGAACACGACGCAGGAATACGGCGGCGGTGCATTCACGGTGGCTGGAGACATCGTTGTCTTCTCGAATTACAACGACCAAAGACTTCACAAGCAATCTTTAAATTCAGATTCGCCTCCGCAAGCACTAACTCCCGATTACGGTGGACGATCAGTTAGTTATGCAGATGGGGTATTTGATTCTCGTTTTAATCGTTTTATTACCGTCCAGGAAGATGGACGTCAAAGTAGCTTGAATCCAATCACCACAATTGTGTCAGTGGAACTTGACGGCAAGGTTATTAATGAACCGAAGGTCTTAGTTGGAGGAAATGATTTCTATGCCTTCCCACGAGTGGATCCCAAAGGGGAACGGATTGCATGGATTGAATGGGGTCATCCTAACATGCCTTGGGATAAATCTGAGCTCTGGGTTGGCTACCTTTCTGAGAATGGAGAGGTCTACAAACGAGTCTGTGTTGCTGGTGGTGATCCAAAGCTTGTTGAATCTCCTACTGAACCGAAGTGGTCTGCTCAGGGTATGTACATAGCTTTTGAAATGATTAAAGAACCTGTAGTCTTTTGGCGTTGCCCGAGATTGCAGGAGTTTGAGGGTAACAATGAGGTGGCTCCAATATATTCTTTAAACACTGAGTTTTCCCGACCCTTATGGGTTTTCGGGACAAACTCTTATGAATTCTTAAGGATCGGCGTTGGGAGAAACATCATAGTCTGCAGCTACAGACAGCGTGGGCGATCATATCTTGGAGTTCTGGATGAGGCGCAAAGCTCACTATCCTTGCTTGATATCCCATTCACGGATATTGAAAATATTGCTCTGGGAAGTCAATGTATATATGTGGAAGGATCATCGGCACTTCATCCATCATCTATTGCCAAGGTGACCTTGAATGAAAGAACCTTGGAAGTAGTAGGTTTCTCTATTATCTGGTCATCTTCGCCAGATATTTTGAAATTTAAGTCGTACTTCAGCCTTCCTGAGTTCATTGAATTTCCAACTGAAGTTCCAGGCCAAAAGGCTTATGCTTACTTTTATCCACCGTCCAATCCTATATACCAGGCTAGTCAGGATGAAAAGCCTCCACTGTTGTTGAAAAGCCATGGAGGGCCAACTGCTGAAACACGTGGAAATTTAAATCCTAGCATTCAATATTGGACTAGTCGAGGCTGGGGTTATGTTGATGTCAATTATGGTGGTAGCACTGGTATGTTTGCAACCATTTCATGGCTGAATTTCTGTGTGGACTCTGGAAAGGTTGATGGAGAACGGTTATGCATCACAGGGGGCTCTGCTGGGGGATATACCACCTTAGCTGCTCTTGCTTTTAGAGATACGTTTAAGGCAGGAGCTTCCTTGTATGGGGTTGTACTACCTAATCAAGCTCGTAAGATATATCATGCATTGAAGGATAAGGGCTTGCCAGTTGCTCTGGTTGAGTATGAAGGAGAACAACATGGTTTCCGCAAGGCAGAAAATATCAAATTTACCCTGGAACAACAAATGATGTTCTTTGCACGATCAGTGGGACGTTTCCAAGTTGCAGATGATATTAACCCTATCAAAATTGATAACTTTGACTAG 2163 44.85 MLLILQFAICSYIKQCKTGSNSATSNDFSRGPALNLILYACAYAQPGNKLASMSLCALLGLVRFSAPSSFLISNSNALNRVFINRVSTGRKFRSYNTMASSMSSSPNINKHVSEVAEQEQLPKITAPYGSWKSPITADVVTGASKRLGGTAVDGNGHLIWLESRPTESGRGVLVKESENPGNEPSDITPKDFSVRNTTQEYGGGAFTVAGDIVVFSNYNDQRLHKQSLNSDSPPQALTPDYGGRSVSYADGVFDSRFNRFITVQEDGRQSSLNPITTIVSVELDGKVINEPKVLVGGNDFYAFPRVDPKGERIAWIEWGHPNMPWDKSELWVGYLSENGEVYKRVCVAGGDPKLVESPTEPKWSAQGMYIAFEMIKEPVVFWRCPRLQEFEGNNEVAPIYSLNTEFSRPLWVFGTNSYEFLRIGVGRNIIVCSYRQRGRSYLGVLDEAQSSLSLLDIPFTDIENIALGSQCIYVEGSSALHPSSIAKVTLNERTLEVVGFSIIWSSSPDILKFKSYFSLPEFIEFPTEVPGQKAYAYFYPPSNPIYQASQDEKPPLLLKSHGGPTAETRGNLNPSIQYWTSRGWGYVDVNYGGSTGMFATISWLNFCVDSGKVDGERLCITGGSAGGYTTLAALAFRDTFKAGASLYGVVLPNQARKIYHALKDKGLPVALVEYEGEQHGFRKAENIKFTLEQQMMFFARSVGRFQVADDINPIKIDNFD 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23408449 23415550 - Lsi04G015870.1 Lsi04g01587 661636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01587 720 Pfam Prolyl oligopeptidase family 601 650 IPR001375 GO:0006508|GO:0008236
Lsi04g01587 720 SUPERFAMILY DPP6 N-terminal domain-like 199 446 - -
Lsi04g01587 720 PANTHER PEPTIDASE S9 PROLYL OLIGOPEPTIDASE 650 720 - -
Lsi04g01587 720 PANTHER PEPTIDASE S9 PROLYL OLIGOPEPTIDASE 122 649 - -
Lsi04g01587 720 PANTHER ALPHA/BETA HYDROLASE FOLD PROTEIN-RELATED 122 649 - -
Lsi04g01587 720 SUPERFAMILY alpha/beta-Hydrolases 520 700 IPR029058 -
Lsi04g01587 720 MobiDBLite consensus disorder prediction 169 190 - -
Lsi04g01587 720 Gene3D alpha/beta hydrolase 513 707 IPR029058 -
Lsi04g01587 720 PANTHER ALPHA/BETA HYDROLASE FOLD PROTEIN-RELATED 650 720 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01587 Lsi-Chr4:23408449 Lsi04g01591 Lsi-Chr4:23421597 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01587 - - bhj:120085177 1105.89