Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01594 ATGGAAGATGTTAAAGTTCTCACCATTTCCGAGCTAATCCAGCGCGGTCTTCCTCTAACTGGAACTTCCAATCTTCATCAATCTTCTTCTTGCAATACACTCCCAACAGAATTATTTCAATCAAATCCAAGCCCTGTTCCTTCAACATCCTCGTCTCCTGCGGAATCGAATCCTAACCCTAAAGTTCTTACTTCTCTAAAATATCCAGTCATCATCATCGGAACCCTAAATCTCCCTACCGATGCTCCGGGGCTGTCCATCTCAAGGTCTTCCTGTCGATGCCCCAGCAATAATTGCTTTCAGTTCACTGATGGTTCGGGTACTATTTGCTGTGATATACTTGATATCGACATTCGACTGATCGGAAAAGAAATTCGGGTCTTATCCTGGAATTTCATTCCGTTGAGAAGCGCTAGTGGTTTCTTGGAAATTATAAAATGGGACTTTCTTTCCCCAAGCAGGGTACTTCCTCAGTGTCCCGACGTTGATCCAGTTCTCTTGGATATAGGTACTTTCTCTACTTCTGACGATAAATTGAAGGTTCGGCACTGTCTTTGTGGTGTATTAGAGTCAGTTGGTCCAGTTACTATTGTTCCGTGTACATTAGGCCAGAGGAATTTACAGAGCAACGTTGGGTCCGATTCTTCCGCAGGCTCGAAAAATCTTCGAGGATTTATGGTTCAAATTATGATCTGTGAGTGTCGGTCATGTACTTCTAAGGAGCCGACGAGTTTACCTGACAATTCAGTTCGAGAAGTTAATACTCATTCATTTGTTAAACCAACAAGTGTGTATCTTTGCGGCTCAGCGTCGCGTTGGCATCCTGCCCTTACGAAATTTGTGGGTTTAGGGTTTATAACTTTTTGGGGTTTGAAAAAGAAGTTGGTCTCCGTCGGTAAGGCGGCGTCCTGTTTGATGTATGTCAGCTCGGAGAAATCCTCTCTCCATCTATCTAGGTTATCTCGTATGAGGCTTCCATGCAAGAAAAGTGCCATCAAGGGGAAGGGAGAATGTGGATCATACACGGGTATAATTAAAGGAGTATATATGCAAGGAATGCTTCTTGAGCTCGAGAACGAGGTCTGGGTTTTGTTGACCGATCATTTCCTTTCTCCACCTCATAGTCTTAGGGTGGGCGCCATTATATCTGTTCGAAATGCACACTTTGTGAATCCTAGATTTCCTTGGTCAAAATTGCTTATACTTGGTACTTGCTTCAAAACTAGCCTCTTTGTGCAGCTATTTTCTCCATTGGAAACCAAGGTATTGCTTCTTATTTCGTCTTTTCGGAAAATGTTTGCCGGTGTTTTATCTGAAAAGGAGATTTTGGGATCAAAACATAATGAAGGACTGGTTCAAATGTATGCTAAATCACATTTACCTGTGTCTATTTATCGATATCAACATGGATCAATGATGAAACTGCATGAGCATGATTCATGTGGCTGTGGTAGTGAACCATGTAACATTAACCTTGAAACTGTGGTTCCTGTCTCTGTTTTATTTTTCTATTGTAATTTTACATGTATGAGAACCAGAAGGTTGAAAAATGAAAGAGTTAATATGTACGAATACAACCAGCTTGACCACTTCAGACTTCTATCTCATGGAGGTAGATCTTCTCATCAGACAACTAGGAAAATTTATCGTAGTGAAGACATTGGCTTTGTTTTGGTTGGCAGTCTGAAGTTGGTTGATGCAACTGGAGGTATTGATGTTATGGTACCTGATCTTCCGTCAACTTGGAATGTCCATGGCATATACGAGGTAACAAAATATATTGTGGTCTTTGAAGGCATCCCGCAAATGGAGAAGTATTTGACCAATCAGTCATTCTCATGCCGGAGTTTTTTTCAGAGCGTCTCATTGGAAAGAGATCTTAGCATAGTAATTTACGCTTATTTTCAATACAGTAATGCAACCTGCAAAAATCTTCCCTCATATTCTTGTGTTGACAATGGATCTAATCTGGAGATATTCGAAAGTGGAACTTATAACCTGCTTGAAGTAACACACAAGTTTCCGATGTTACGAAAGCGGAGGGAAGATGCTAGAACTGCAAATGATCAGAAATATGTTGATAAGAGACTTAAAATTGATGACCCATCAGGGAGGGTAGAAGGTTCAGATATAGCATGTGACTTTGACGAGTCTAGCTGTAGGTTTAATGGTTGTTGCACTTGTTACAAAGTACCTAATGAGGAGCAGAAATGTTGCAACTTGAGCCATCACAGAATTTCTTGTGTTGCTACTGTTAGGAGTTCAAATCATGGTAGCCAAGACATGCTAGGTTTCCTGTACAACACAAGAACTGAACCAAGTAGTGGTGGTTGTTCCAGATTAAGTGCTCAAAAGATTTTGTTAGAGATTCAACCTGAAAGTCTTTTTAAATATCAGTATAAAGGTAATAATATGCTTTCATCAACATTTCAGTTCCTGCGGATTGGCAATTACTACATCACAAAACGTAATAAAGATCATTCTTTATTTGACATAGTGGAACGCAATTGTGTCAACAGCCAAAAATTTCTTATAACTTCAAGTACTCATTTATGGAGCATCTCACTCACTTTTGGTAATGATATCCTCCATAGTACTGAATCGAACAACATTCAGTTCAATGACTTTTCCGTTTGTGATAGTGGAGTGATTTCAGGAGATCAAATTGATTTGCATTATGGATCTTTTTCAGATATGTATCTTCATCTTCCCGAAAGTGCAAAAGATATTTTGGTGTTTGATATTGAAAAACAGGATGAAAATTCAAACAAACTAGTTTTAAGACCTGAAGAGATCGGCAAACCTTCTCCCTGTGATAGAGATGTGACATCATCAGACATGCAAACCTCTGCTTTCCATGGATCTGACTGTCTGTTTCCTGAAGGAAACCTATCAACTGCAAAAGGTCATGTGGTTGCAGTTCATGATCTTCATCAAAGTTGCATTGATTCTGATTTAAAGTGTCAAAGTATTAAAGAAGGTAGCCCGTGCAGATTCTTTGTGGGTGCGAAAAGCACTTGCATTCATCTTCTGATGGGGGACCAAATTGTGAAAATTTTTGGTTATCTGAAGAATCATGCTTTACCTGTTGGATTTGGGCCTGGTGTGAGTGCAACTTTCCATCGAGTTTTAGAGCTTGGGGATCTACGGAGATTAATGTTGACTCCGCTATCTTTCATAGAGATCAATTCTTTCCGGGTACTTGATTATTCGTTTACTGAGAAGTATCCTGACACTGTCTCATATTCAGACACTATTTCTTTGCAACTATTTTCTGAACTGATTCATTCCCACTGCAAGTTAACAAAGTTCCGTTGTAGAGTAGTTGCTGTCAATTTTCTAGTCCTGGAGAAGAACATTGATCACGTCAATTTGCAAGTTGAAATGTCTCAAAGGCAACCTCTTGTAAAGATTCCTCTTGCTGGATTCATGTTGGATGATGGTTCATCCAGATGCAACTGCTGGGCTAGTGGTGAAAGAGCAGCAGCTTTGTTGCGGCTGCATGATCCACTTCCACATTTAGCTTTTAGGAATATTGACTGGACATTAAAATGGACTGGGATGACTCATAACTCCCGTGCCACTGCAAGCTATCATCTGGGCAAGGTTCTGAAGAACCATGGTAGAATTATTGTGAGAAGTTGTGGGTCAATCCTCAATTCTTATCAAGGCCTTGATATTTCTCTTGCTTCAGATGATGCTCTCAGCAGTGCGGATGAGAGTCTTCTCAAGTTCATATTAGTGAATTCATGTCTTGGTGCCATTTGGACTCTCATTGGGAGTCAGTTGGATTCAGATGCTGTTCGAAATCTGTTAAAGGAACACATAACGGAACCAGGGTTGATGGAGTCTCATAATATATGGGTGACGGATGTTTATTGTACAAATGCTCTTAATGAGGCCAGGAATGCTATCCTGGAATTGGCGAACAGTTGA 3936 40.22 MEDVKVLTISELIQRGLPLTGTSNLHQSSSCNTLPTELFQSNPSPVPSTSSSPAESNPNPKVLTSLKYPVIIIGTLNLPTDAPGLSISRSSCRCPSNNCFQFTDGSGTICCDILDIDIRLIGKEIRVLSWNFIPLRSASGFLEIIKWDFLSPSRVLPQCPDVDPVLLDIGTFSTSDDKLKVRHCLCGVLESVGPVTIVPCTLGQRNLQSNVGSDSSAGSKNLRGFMVQIMICECRSCTSKEPTSLPDNSVREVNTHSFVKPTSVYLCGSASRWHPALTKFVGLGFITFWGLKKKLVSVGKAASCLMYVSSEKSSLHLSRLSRMRLPCKKSAIKGKGECGSYTGIIKGVYMQGMLLELENEVWVLLTDHFLSPPHSLRVGAIISVRNAHFVNPRFPWSKLLILGTCFKTSLFVQLFSPLETKVLLLISSFRKMFAGVLSEKEILGSKHNEGLVQMYAKSHLPVSIYRYQHGSMMKLHEHDSCGCGSEPCNINLETVVPVSVLFFYCNFTCMRTRRLKNERVNMYEYNQLDHFRLLSHGGRSSHQTTRKIYRSEDIGFVLVGSLKLVDATGGIDVMVPDLPSTWNVHGIYEVTKYIVVFEGIPQMEKYLTNQSFSCRSFFQSVSLERDLSIVIYAYFQYSNATCKNLPSYSCVDNGSNLEIFESGTYNLLEVTHKFPMLRKRREDARTANDQKYVDKRLKIDDPSGRVEGSDIACDFDESSCRFNGCCTCYKVPNEEQKCCNLSHHRISCVATVRSSNHGSQDMLGFLYNTRTEPSSGGCSRLSAQKILLEIQPESLFKYQYKGNNMLSSTFQFLRIGNYYITKRNKDHSLFDIVERNCVNSQKFLITSSTHLWSISLTFGNDILHSTESNNIQFNDFSVCDSGVISGDQIDLHYGSFSDMYLHLPESAKDILVFDIEKQDENSNKLVLRPEEIGKPSPCDRDVTSSDMQTSAFHGSDCLFPEGNLSTAKGHVVAVHDLHQSCIDSDLKCQSIKEGSPCRFFVGAKSTCIHLLMGDQIVKIFGYLKNHALPVGFGPGVSATFHRVLELGDLRRLMLTPLSFIEINSFRVLDYSFTEKYPDTVSYSDTISLQLFSELIHSHCKLTKFRCRVVAVNFLVLEKNIDHVNLQVEMSQRQPLVKIPLAGFMLDDGSSRCNCWASGERAAALLRLHDPLPHLAFRNIDWTLKWTGMTHNSRATASYHLGKVLKNHGRIIVRSCGSILNSYQGLDISLASDDALSSADESLLKFILVNSCLGAIWTLIGSQLDSDAVRNLLKEHITEPGLMESHNIWVTDVYCTNALNEARNAILELANS 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23471550 23480227 - Lsi04G015940.1 Lsi04g01594 661643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01594 1311 Coils Coil 1301 1311 - -
Lsi04g01594 1311 MobiDBLite consensus disorder prediction 40 60 - -
Lsi04g01594 1311 Pfam CST, telomere maintenance, complex subunit CTC1 66 380 IPR028262 GO:0000723
Lsi04g01594 1311 PANTHER CST COMPLEX SUBUNIT CTC1 1 1310 IPR042617 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01594 - - - cmax:111476801 2117.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g825 . . . . . . Bma04g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01594 . . . . . . . . . . . . . Cmo09g00200 . . . Car09g00174 . . Bhi09g03370 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005908 1 9 1 1 0 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01594 Lsi_Chr04 FPKM 0.485268 1.739699 14.703593 11.565223 96.669487 88.792358 88.589111 13.100231 14.291887 13.220079