Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01601 ATGGCGGTTGTTACTGATCCTATTGCTTCCATGCAGCTTCTCGTTAATACCCTTCAGGCTCCACCGTATGCGGCAGCCGCCGTTCTGGGTGGCGTCTCTTTGATGCTTTCGGTGTTTCTCGTTGCTGATTGTAAAAAGAAACGACGGAATTTTCTCCCTCCAGTGCCGGCGATTCCGGGGGTGCCATTGTTGGGGAATTTGTTGCAGTTGAAGGAGAAGAAGCCTCACATGACGTTTGCACGGTGGGCCGAGACGTACGGTCCGGTTTATTCCATAAGAACCGGCTCTTCCACTGTGATTGTTCTCAACACCGCTGAAGTTGCCAAAGAGGCTATGGTGACGAGATACGCTTCCATTTCCAGTAGAAAGCTAAGCAAAGCCCTTACCATCTTGACGGCTGATAAATGCATGGTTGCTATGAGCGATTACAATGACTTTCACAAGATGGTAAAGAGATACATATTGGCGAATGTCTTGGGGGCTAATGCTCAGAAGAAACACAGACAAAGGAGAGACACCATGATTGAGAATATTACTAGGGAGTTGTTTGCTCATCTGAAGGATTTTCCATCAGAAACTGTTAATTTTCGAAAGATCTTCGAATCAGAACTCTTTCGGCTGGCGCTTAAAGAAACACTTGGGAAAGATATTGAGTCGATATATGTCGATGGGCTCGGTACGACGTTGCCAAGGGAAGATCTGTTCAGAGTTTTAGTGATTGATCCAATGGAAGGTGCAATTGAGGTTGATTGGAGGGATTTCTTCCCATATCTGAGATGGATTCCCAATAAGAATGTGGAGAATAGAATAAGGAAAATGGATTTTCGGAGGCGAATGACAATGAAGAGCTTAATTGAGGAGCAGAAGAAACGAATTGCAGCAGGGGAGGAAACGAATTGCTATGCTGATTTCTTGTTATCTGAAGCAAAAACACTTACAGAGGATCAGATAGCCATGTTACTTTGGGAGACCATCATTGAAACCTCAGACACTACACTGGACTATCTGTATCAGCATATACTGAGTGTCTGTGGATCTGCAAAGCTTACTGAAGAAAACCTGTCACAGCTTCCATATCTAACTGCTGTTTTTCATGAAACTCTTCGGAAGCATAGTCCAGTCCCAGTCGTCCCATTGCGATATGCGCATGAAGATACCCAATTAGGCGGGTTCTTTGTTCCTGCAGGGAGTGAGGTGAGCCATTCTAGAACCCTGAAACATTCCAGTATCGCCGTGAACATTTACGCATGCAACATGGACAAGGATCATTGGGAAAGCCCTGAGGAATGGAAGCCAGAGAGGTTTCTGGATGAGAAGTATGATCCAATGGATCTGCACAAAACCATGGCCTTTGGAGGAGGGAAGAGGGTGTGTGCAGGTGCTCTCAAGGCAATGCTGATAGCCTGCACAACCATAGGAAAGATGGTTCAAGAGTTTGAGTGGGAGCTGAGGGAAGGGGAAGAGGACAAGGTGGACACTCTTGGCCTCACCGCTCGCAAGCTCCAGCCACTGCACTTAGTCGTAAAGCCGAGGATCAACTAA 1542 46.37 MAVVTDPIASMQLLVNTLQAPPYAAAAVLGGVSLMLSVFLVADCKKKRRNFLPPVPAIPGVPLLGNLLQLKEKKPHMTFARWAETYGPVYSIRTGSSTVIVLNTAEVAKEAMVTRYASISSRKLSKALTILTADKCMVAMSDYNDFHKMVKRYILANVLGANAQKKHRQRRDTMIENITRELFAHLKDFPSETVNFRKIFESELFRLALKETLGKDIESIYVDGLGTTLPREDLFRVLVIDPMEGAIEVDWRDFFPYLRWIPNKNVENRIRKMDFRRRMTMKSLIEEQKKRIAAGEETNCYADFLLSEAKTLTEDQIAMLLWETIIETSDTTLDYLYQHILSVCGSAKLTEENLSQLPYLTAVFHETLRKHSPVPVVPLRYAHEDTQLGGFFVPAGSEVSHSRTLKHSSIAVNIYACNMDKDHWESPEEWKPERFLDEKYDPMDLHKTMAFGGGKRVCAGALKAMLIACTTIGKMVQEFEWELREGEEDKVDTLGLTARKLQPLHLVVKPRIN 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23538165 23541839 - Lsi04G016010.1 Lsi04g01601 661650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01601 513 SUPERFAMILY Cytochrome P450 53 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 PRINTS E-class P450 group I signature 107 128 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 Pfam Cytochrome P450 59 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 Pfam Cytochrome P450 336 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Lsi04g01601 513 Gene3D Cytochrome P450 39 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01601 513 PANTHER ENT-KAURENE OXIDASE, CHLOROPLASTIC 24 511 IPR044225 GO:0005506|GO:0009686|GO:0010241|GO:0020037|GO:0052615
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01601 Lsi-Chr4:23538165 Lsi03g01628 Lsi-Chr3:27403667 4.81E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01601 K04122 - csv:101209283 918.687