Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01602 ATGAAGGGCTGTTGTTTGTTCATCTCTATTCTTCTTCTTCAATCTTCTCTTCCATTTTTGTCTTTGGCCCTTTCCGATGCCGAAGCTTCTTTCATTGCCGGCCGCCAACTTCTAACCCTTCACGAGAATCATGATTTGCCCGACGATTACGAGTCTACAATCGAGGTCACTGAGACATTTTCCAGCCCCAGGCTCCGACGGGCTTTCATTGCCCTTCAAGCCTGGAAGCTTGCTATCTATTCAGACCCTTTAAACACCACCGCTAATTGGGTCGGCGCCGATGTCTGCTCCTACACCGGAGTTTTCTGCGCCCCTGCTCTCGACGACCCCAAACTCGAAGTCGTCGCCGGAATTGACCTCAACCATGCCGACATCGCCGGTTACCTGCCCGTGGAGCTCGGTTTGCTGACTGACATTGCACTGTTCCACATCAACAGCAACAGATTCTGTGGCATTGTCCCGTCGAGCTTTTCCAAGCTTACTCTGCTCCACGAGCTTGACATTAGCAACAACAGATTTGTAGGGCATTTCCCTGAAGTGGTTGTGAGAATCCCTAATTTGAAATATCTGGACATCAGATACAATGATTTCGAAGGCGAATTGCCTCCGGAGCTTTTCACCAAGGAACTCGATGCCATTTTCCTAAACAACAACAGATTCACTTCCTACATTCCTGAAAATTTTGGAGAGTCGCCGGCATCGGTGATTGTGATTGCGAACAACAACTTCACGGGATGTATTCCGAGCAGCGTTGGCAAAATGGGGAATACCCTGAACCAGCTTATAATGTTGAACAATGGATTACTTGGTTGTTTGCCTCCTGAAATTGGGTTGCTGGGAAATGCTACCGTTTTGGATGTTTCGTCAAATAAGTTGAGTGGATTCTTGCCAGAGAGCTTCGATGGGTTGAAGAAGAAGGTGACAGACACTTGTACTCCGGTCATCAGCAAGAGCGTTGATTGCAGTAAGGCTAAGTGTGGCGGAGGATCCTCATCGTCAAATCCACCTCCACACAAGCAAGAGGTTTCTGTACCAAAAGCACCTAAACCATCTCCAATCCCAGAGCCTGAGGCACCAATATCTTCGCCAGTGTCCGAGCCCCCCGACGCACCAACACCTTCCCCTATTGATGATCCTTCTGATCAGTCACCAGTCCCAAGATACCGCCCTCCTCCTCCACCTGCAGTGCACTCCCCACCACCACCAGTTCACTCTCCACCACCACCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCACCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCCCCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCCCCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCCCCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCCCCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCCCCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCCCCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCCCCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCACCGGTTTCATCTCCACCACCACCAGTCCACTCTCCACCACCACCAGTTTCATCTCCACCACCACCAGTTCACTCTCCCCCACCACCGGTTTTCTCGCCCCCACCACCAGTGCACTCACCTCCACCTCCAGTGCACTCACCACCACCTCCAGTCCATTCACCACCACCTCCAGTCCATTCACCACCACCTCCAGTCCAGTCTCCTCCACCTCCAGTATTTTCTCCGCCACCACCTTCCCCATCTCCATCTCCTCCTCCTCCGGTCGAATCTCCACCGCCTCCACTAGAAGACATCATTCTTCCACCAAACTTGGGCTTCCAGTACTCGTCACCGCCTCCACCA 1944 53.45 MKGCCLFISILLLQSSLPFLSLALSDAEASFIAGRQLLTLHENHDLPDDYESTIEVTETFSSPRLRRAFIALQAWKLAIYSDPLNTTANWVGADVCSYTGVFCAPALDDPKLEVVAGIDLNHADIAGYLPVELGLLTDIALFHINSNRFCGIVPSSFSKLTLLHELDISNNRFVGHFPEVVVRIPNLKYLDIRYNDFEGELPPELFTKELDAIFLNNNRFTSYIPENFGESPASVIVIANNNFTGCIPSSVGKMGNTLNQLIMLNNGLLGCLPPEIGLLGNATVLDVSSNKLSGFLPESFDGLKKKVTDTCTPVISKSVDCSKAKCGGGSSSSNPPPHKQEVSVPKAPKPSPIPEPEAPISSPVSEPPDAPTPSPIDDPSDQSPVPRYRPPPPPAVHSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVFSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVFSPPPPSPSPSPPPPVESPPPPLEDIILPPNLGFQYSSPPPP 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23544642 23546786 - Lsi04G016020.1 Lsi04g01602 661651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01602 648 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 518 648 - -
Lsi04g01602 648 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 420 523 - -
Lsi04g01602 648 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 305 - -
Lsi04g01602 648 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Lsi04g01602 648 Pfam Leucine Rich Repeat 283 303 IPR001611 GO:0005515
Lsi04g01602 648 MobiDBLite consensus disorder prediction 322 648 - -
Lsi04g01602 648 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 476 578 - -
Lsi04g01602 648 PRINTS Proline rich extensin signature 363 379 - -
Lsi04g01602 648 PRINTS Proline rich extensin signature 344 356 - -
Lsi04g01602 648 PRINTS Proline rich extensin signature 390 402 - -
Lsi04g01602 648 PRINTS Proline rich extensin signature 402 423 - -
Lsi04g01602 648 Pfam Leucine rich repeat 143 197 IPR001611 GO:0005515
Lsi04g01602 648 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 476 578 - -
Lsi04g01602 648 MobiDBLite consensus disorder prediction 341 633 - -
Lsi04g01602 648 SUPERFAMILY L domain-like 78 304 - -
Lsi04g01602 648 Gene3D Ribonuclease Inhibitor 69 234 IPR032675 -
Lsi04g01602 648 MobiDBLite consensus disorder prediction 325 339 - -
Lsi04g01602 648 Gene3D Ribonuclease Inhibitor 235 309 IPR032675 -
Lsi04g01602 648 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 518 648 - -
Lsi04g01602 648 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 420 523 - -
Lsi04g01602 648 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 3 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01602 Lsi-Chr4:23544642 Lsi09g01583 Lsi-Chr9:23966231 1.87E-140 dispersed
Lsi04g01602 Lsi-Chr4:23544642 Lsi06g00231 Lsi-Chr6:2653715 5.53E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01602 - - cmax:111480794 479.944