Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01604 ATGTTTGTATTGACTGGCATAGTAAATTCATGGGCCCTTGAAGAAAGTAAGGGGTTCTTCTCTGATCGCGTTAAAGAATTCATGCATCTTTCACTATGGAAGCCGTTGTCCCATTGCGCCGCTTTAATCATGGACAAAAAAACCAGAAGGCGACACGGTTCTGGTGTAACAGAGAGGCGCAAATCCTCCATTCTCAGGCAATTGCAAGAAAACAAGCTCAGAGAGGCTCTGGAAGAAGCTTCTGAAGATGGGTCTCTCGCAAAATCTAGAGACATTGACTGTGAATCGCCAAATCAGGACAGGAATGTTCGACGGTCGAGATCTCTCGCTCGGCTTCATGCCCAAAAGGAGTTTCTACGCGCCACCGCACTTGCCGCCGACCGGACCTATTCCACGGAGGATTTTATTCCGAATCTCTTCGATGCCTTCACCAAATTCCTCACTATGTACCCAAAATTTCAGACGTCAGAAAAAATCGACCAGTTGAGATCAGAAGAATATGAGCATCTCTCAGAGTCGTTCTCGAAGGTATGTCTTGACTACTGTGGTTTTGGTTTATTTTCCCACATTCAAACACAACAATTTTGGGAGTCTTCGGCGTTTACCCTCTCTGAAATTACTGCCAATTTGAGCAACCACGCGCTATACGGCGGCGCTGAGAAGGGCACGATTGAACACGATATCAAGACTAGAATTATGGATTATCTGAACATTTCTGAAAATGAATATGGGCTTGTTTTTACAGTCAGTAGGGGATCGGCCTTTAAGCTCTTGTCTGAGTCTTACCCTTTTCATACGAATAAGAAGCTGTTGACTATGTTTGATCATGAGAGTCAATCTGTGAGTTGGATGGCTCAGAGTGCTAAAGAGAGGGGTGCAAAGGTTTACAGTGCATGGTTTAAGTGGCCAACATTGAGACTCTGTTCAAGGGAGTTGAGGAAACAGATCACAAACAAGAGGAAGAGGAAGAAGGATTCTGTTGCTGGCCTTTTTGTGTTTCCTGTTCAGTCTAGAGTTACAGGGGCAAAGTATTCTTACCAGTGGATGGCACTTGCCCAGCAGAACAATTGGCATGTATTGCTCGATGCTGGCTCGCTCGGTCCTAAGGACATGGATTCCTTGGGGCTCTCTCTCTTCAAGCCCGATTTTATCATTACATCGTTTTATCGCGTTTTCGGGTCTGATCCAACTGGGTTTGGCTGCCTGTTGATTAAGAAATCTGTTATAGGGAGTTTGCAAAACCAATCTGGGCGGACTGGTACAGGAATGGTGAGGATACTCCCCATTTTTCCACAGTATATTGGTGATTCGATTGATGGTTTGGTGGATGTCTTGGCTGGGATTGAAGATGATGAAATTAATGGTCAGGAGGATTCTGAAACTGAGAAGCATCAGGAGTCACGCATGCCTGCCTTTTCGGGTGTGTTTACGTCGAACCAGGTGAGGGATGTGTTTGAGACTGAGATGGAGCAGGATAATAATAGCTCGGACAGGGATGGGGCTAGTACCATTTTTGAGGAAGCTGAGAGCATCTCAATTGGTGAGGTTATGAAGAGTCCAATCTTCAGTGAGGACGAGTCGTCGGACAATTCATATTGGATTGATTTGGGTCAGAGTCCATTTGGTTCTGATAATTCTGGCCATTTGATCAAGCAAAAAACATGGTCACCCTTACCACCATCTTGGTTTTCTGGAAAAAGGAACACTAGGAAACGTTCACCAAAACCAGCATCTAGGTTGTTGAAAAGTCCAATGTGCGGTGATGATAAGCGGATGAATTCAAGGCACTATGAAGATTCGGTGTTGTCTTTTGATGCAGCTGTATTATCAATGTCACAGGATTTCGGCTGTGTGAAGGGGATTCCTGAAGAAGAACAATCTGGAGAGCAAGACTCTTGCTGTGGAAATGTAGGAAGTTTGAGGGATTCTCATGCTGTTAGTGAGATTCAAGAGGATTCAGAAACTGGAGAAGAATCAGGTAGGTTGAGTGTTGCATCAAATGGAACCCGACCTGCGAATCAGACTTCCGAGTTTCAGGATCTGAAGCGTTCAAATTCCACAACATCTGGAGCCTTCAAAGACCTGAAGGAAAGTGCTATAAGAAGGGAGACAGAAGGGGAATTCAGACTCTTGGGTAGGAGGGAAAGGAGTAGATTTTCTGAACGTGGGTTCTTTGGTTTAGAAGAGGGAGATAGAGCGATAAGCATGGGTTGCCATGTATCATTTAGTGTAGAATATAATGAAAAAGAAAGTTTGAACGAGATGTTTGAGCTTGGTGAAACATCTAATGCAGCCTTTGGCAACGAGGAATCAACAAGTGATGGAGAATATGTTGATGAGCAAGAATGGGGAAGGAGGGAGTCTGAAATGATCTGTCGGCATCTTGATCATATTGATATGTTGGGCCTCAACAAGACTACCCTCCGACTAAGATACCTCATTAACTGGCTCGTTACTTCGTTACTTCAACTCCGATTACCCGGTCGAGATGATGTAGGGGTCCACCTTGTACAACTATATGGACCAAAGATCAAATACGAAAGAGGTGCTGCGATTGCTTTCAATATAAAAGAGAGCAATGGAAGAGGGCTAATACATCCGGAAGTCGTACAAAAACTGGCTGAAAATAATGGAATATCTCTTGGAGTTGGCATTCTCAGCCATGTGCGAGCGGTAGACGTTCCGAAGCAGAATTCTGGACAGTATGATCTCGAAGACATGGCGTTGTGCAAACCTATGGGTAATGGCCATAACAGGAAGAAACTATTTTTCCGAGTCGAGGTTGTCACAGCTTCCCTTGGATTCCTTACCAACTTTGATGATGTTTATAAAATGTGGGCTTTCATAGCCAAGTTTCTAAATCCATCATTTCTTGAAAACAATACTTTGTCTTCCGTCCCTGAGAGTTCGGAATCCTATCACCGGAGCCTGTTTTAG 2937 44.3 MFVLTGIVNSWALEESKGFFSDRVKEFMHLSLWKPLSHCAALIMDKKTRRRHGSGVTERRKSSILRQLQENKLREALEEASEDGSLAKSRDIDCESPNQDRNVRRSRSLARLHAQKEFLRATALAADRTYSTEDFIPNLFDAFTKFLTMYPKFQTSEKIDQLRSEEYEHLSESFSKVCLDYCGFGLFSHIQTQQFWESSAFTLSEITANLSNHALYGGAEKGTIEHDIKTRIMDYLNISENEYGLVFTVSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLCSRELRKQITNKRKRKKDSVAGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFKPDFIITSFYRVFGSDPTGFGCLLIKKSVIGSLQNQSGRTGTGMVRILPIFPQYIGDSIDGLVDVLAGIEDDEINGQEDSETEKHQESRMPAFSGVFTSNQVRDVFETEMEQDNNSSDRDGASTIFEEAESISIGEVMKSPIFSEDESSDNSYWIDLGQSPFGSDNSGHLIKQKTWSPLPPSWFSGKRNTRKRSPKPASRLLKSPMCGDDKRMNSRHYEDSVLSFDAAVLSMSQDFGCVKGIPEEEQSGEQDSCCGNVGSLRDSHAVSEIQEDSETGEESGRLSVASNGTRPANQTSEFQDLKRSNSTTSGAFKDLKESAIRRETEGEFRLLGRRERSRFSERGFFGLEEGDRAISMGCHVSFSVEYNEKESLNEMFELGETSNAAFGNEESTSDGEYVDEQEWGRRESEMICRHLDHIDMLGLNKTTLRLRYLINWLVTSLLQLRLPGRDDVGVHLVQLYGPKIKYERGAAIAFNIKESNGRGLIHPEVVQKLAENNGISLGVGILSHVRAVDVPKQNSGQYDLEDMALCKPMGNGHNRKKLFFRVEVVTASLGFLTNFDDVYKMWAFIAKFLNPSFLENNTLSSVPESSESYHRSLF 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23551549 23556184 + Lsi04G016040.1 Lsi04g01604 661653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01604 978 Gene3D - 197 446 IPR015421 GO:0003824
Lsi04g01604 978 PANTHER OS03G0765800 PROTEIN 59 971 - -
Lsi04g01604 978 MobiDBLite consensus disorder prediction 644 698 - -
Lsi04g01604 978 MobiDBLite consensus disorder prediction 560 592 - -
Lsi04g01604 978 MobiDBLite consensus disorder prediction 659 693 - -
Lsi04g01604 978 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 59 971 - -
Lsi04g01604 978 MobiDBLite consensus disorder prediction 79 106 - -
Lsi04g01604 978 SUPERFAMILY PLP-dependent transferases 177 421 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01604 - - - bhj:120087021 1804.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01604 Lsi-Chr4:23551549 Lsi10g00624 Lsi-Chr10:8727252 0 dispersed
Lsi09g00317 Lsi-Chr9:3283032 Lsi04g01604 Lsi-Chr4:23551549 8.53E-31 transposed
Lsi09g00566 Lsi-Chr9:6080144 Lsi04g01604 Lsi-Chr4:23551549 4.34E-35 transposed
Lsi10g01526 Lsi-Chr10:19634774 Lsi04g01604 Lsi-Chr4:23551549 2.58E-15 transposed
Lsi01g01012 Lsi-Chr1:8398631 Lsi04g01604 Lsi-Chr4:23551549 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g837 . Blo12g00938 Bda01g00558 Bda03g00231 Bpe02g00415 Bpe04g00196 Bma04g00183 Bma01g02291 . . Cma01g01875 Cma09g00198 Car01g01461 . . Cpe06g00135 . . . . . . . . . . . . . . . Cone4ag1547 Cone7ag1404 . . Lsi04g01604 Csa03g04151 Chy04g00569 . . . . . . . . . . Cmo01g01933 Cmo09g00193 . . . Car09g00167 . Cpe02g00153 Bhi09g02024 . . . . Mch11g0244 . Cla05g01995 Cam05g2146 Cec05g2161 Cco05g2209 Clacu05g2137 Cmu05g2009 Cre05g2134 . . . Cme04g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005433 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01604 Lsi_Chr04 FPKM 19.659868 22.96488 21.350471 20.010719 22.733116 22.647234 23.88645 25.291464 21.871138 23.04307