Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01605 ATGATGGGGACGGAGTCTCGCCGGGAGATGGTGACCGCCAGGCGGCCTTGCTTCTATACTTTCTATTCCTCCACACTTTGTGCAGAACGACTGGTCAAAGATGAATCTAAACTTCCTTTGAAATTTGTCAAACACTTGGAAGAAATAATAGGCCGATCAGTTGTGTTAAATGGTCCTAGCGGCCAAACTTGGCTCGTTAACTTGATCCAGCAGAATGATAACTTGTTCTTCTGTGATGGATGGCCAACTTTTGCACGAGATCACGCCCTAGAGTGCGGTGATTTTCTGGTTTTTAGATATGATGGCGAGTTGCATTTCAATGTGCAAGTTTTTGATCAGAGTGCATGTGAGAAAGAAGGTTCATTTCATTCTCAATGCAGTCAAGATAACACAGGCCATAAAAGAGACAGGGAGGAGGACCATTCATCCCCAGAGACATGCGAGGAGGCTGTGGCAAAGAAAATGAGGAGCATTTTTGATGTTCATTCAGATTGCAGCAGGGAGAACCTAGCGGCCATAAGAACTGTTGAGGGCCACAAAAGTGCAGCTGGTCAGAATGGGATCAGTAAAGTTGATGACAGAACTACGCACGATAAAATTCTGGCCTCACCACTATCATTCCAGGATGAGAAGAAAGTTTCCCAGTCTTTTAGCTCCAATTTTCCATATTTTGTGAGAATCATGAAAAGCTTCAACGTTTGTGGTTCATACACATTGAATATCCCTTATCAATTTTCAATGACACATCTTCCTAGCTGCAAATTAAAGTTAGTCCTCCACAATTTGAAAGGGGAATCCTGGACAGTGAATTCTGTTCCTACAACGAGAGTGCATACAAGTCACACTCTCTGTGGAGGATGGATGGCCTTTGTGCGTGGGAATGACATCAACATGGGAGATATATGTGTTTTCGAACTTGTTCGGGATTGTGAATTGCATGTTCACATCTTCAGGGTTGGAAAGGAAATATCTGAGGATCAAAGTGGAAAAGGAACTTTGAATAGGCTAGGTGCTGGCCATGCAGTAATTCCTCGTAAAGCTCTCAAAGTTAATCGGAGAACTGGTGTCAAAGCTGATCTTGTATTACCAGCTAGACTTGGTTTGCGAGCAATGTTGGCACGTGATGAAGAAAGGGCAGCTAAATCGTTTGTTTCTTGTTTTCCAAGTTTTGTCAGAATCATGAAAAAGTTCAACACAAGTGGTTCATATACGCTGAAAATTCCGCATCAGTTTTCTTCAGCACATTTCCCTGACAGCAGAACTGAGATCTTACTTCGTGGTCCAAATGGAGGATGTTGGATTGTGAACTCAGTACCAGACTCGATGGGGCGATTGATGCATACTTTTTGCGGTGGTTGGATGTCGTTCGTTCGTGACAATGGTATCCAGATGGGGGATATCTGCATATTCGAACTTGTCGGCAAGTGTGAATTGCTTGTACATATAACCGGAGTCGGGAAGAAAGGGTTTGACCTCAGCAGCGAAGTCACAACTTGTAGTGAATTAGCTATTGTTCCAACGACAAGCAATCCTCCTTCTCTGTAA 1545 43.43 MMGTESRREMVTARRPCFYTFYSSTLCAERLVKDESKLPLKFVKHLEEIIGRSVVLNGPSGQTWLVNLIQQNDNLFFCDGWPTFARDHALECGDFLVFRYDGELHFNVQVFDQSACEKEGSFHSQCSQDNTGHKRDREEDHSSPETCEEAVAKKMRSIFDVHSDCSRENLAAIRTVEGHKSAAGQNGISKVDDRTTHDKILASPLSFQDEKKVSQSFSSNFPYFVRIMKSFNVCGSYTLNIPYQFSMTHLPSCKLKLVLHNLKGESWTVNSVPTTRVHTSHTLCGGWMAFVRGNDINMGDICVFELVRDCELHVHIFRVGKEISEDQSGKGTLNRLGAGHAVIPRKALKVNRRTGVKADLVLPARLGLRAMLARDEERAAKSFVSCFPSFVRIMKKFNTSGSYTLKIPHQFSSAHFPDSRTEILLRGPNGGCWIVNSVPDSMGRLMHTFCGGWMSFVRDNGIQMGDICIFELVGKCELLVHITGVGKKGFDLSSEVTTCSELAIVPTTSNPPSL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23557558 23561052 + Lsi04G016050.1 Lsi04g01605 661654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01605 514 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 366 500 IPR044837 -
Lsi04g01605 514 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 334 IPR044837 -
Lsi04g01605 514 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 366 500 - -
Lsi04g01605 514 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 6 334 - -
Lsi04g01605 514 SUPERFAMILY DNA-binding pseudobarrel domain 217 319 IPR015300 -
Lsi04g01605 514 ProSiteProfiles B3 DNA-binding domain profile. 390 486 IPR003340 GO:0003677
Lsi04g01605 514 CDD B3_DNA 388 482 IPR003340 GO:0003677
Lsi04g01605 514 Gene3D - 9 116 IPR015300 -
Lsi04g01605 514 MobiDBLite consensus disorder prediction 122 145 - -
Lsi04g01605 514 Pfam B3 DNA binding domain 36 113 IPR003340 GO:0003677
Lsi04g01605 514 Pfam B3 DNA binding domain 224 318 IPR003340 GO:0003677
Lsi04g01605 514 Pfam B3 DNA binding domain 390 482 IPR003340 GO:0003677
Lsi04g01605 514 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Lsi04g01605 514 CDD B3_DNA 23 112 IPR003340 GO:0003677
Lsi04g01605 514 SUPERFAMILY DNA-binding pseudobarrel domain 386 484 IPR015300 -
Lsi04g01605 514 SMART B3_2 224 320 IPR003340 GO:0003677
Lsi04g01605 514 SMART B3_2 390 486 IPR003340 GO:0003677
Lsi04g01605 514 SMART B3_2 22 114 IPR003340 GO:0003677
Lsi04g01605 514 Gene3D - 373 486 IPR015300 -
Lsi04g01605 514 Gene3D - 207 321 IPR015300 -
Lsi04g01605 514 CDD B3_DNA 222 318 IPR003340 GO:0003677
Lsi04g01605 514 ProSiteProfiles B3 DNA-binding domain profile. 224 320 IPR003340 GO:0003677
Lsi04g01605 514 SUPERFAMILY DNA-binding pseudobarrel domain 22 116 IPR015300 -
Lsi04g01605 514 MobiDBLite consensus disorder prediction 129 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01605 - - - csv:101214902 563.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01016 Lsi-Chr1:8433612 Lsi04g01605 Lsi-Chr4:23557558 2.70E-15 dispersed
Lsi01g01018 Lsi-Chr1:8442678 Lsi04g01605 Lsi-Chr4:23557558 1.75E-25 dispersed
Lsi04g01605 Lsi-Chr4:23557558 Lsi10g00600 Lsi-Chr10:8622330 1.93E-06 dispersed
Lsi02g00470 Lsi-Chr2:3918338 Lsi04g01605 Lsi-Chr4:23557558 1.20E-12 transposed
Lsi01g01013 Lsi-Chr1:8407029 Lsi04g01605 Lsi-Chr4:23557558 5.15E-12 wgd
Lsi04g01605 Lsi-Chr4:23557558 Lsi08g01430 Lsi-Chr8:22538517 4.38E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25216 PF02362 B3 6.00E-12 CL0405 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01605 Lsi_Chr04 FPKM 6.429565 7.294446 13.534719 14.645031 4.924237 5.103856 4.664216 17.253922 14.887008 14.538578