Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01607 ATGATCAACTCACCATCTTCTTTGCCTGACCTCTCCTTGCAGATCAGTCTTCCCATGTCCATCATAACGCCGCCGCCGCCGCCGTGTGACACGAATTCGAGTTCTAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTTTTCCGTTTAGGGTTTGAAGTGGGAGATATGGATGTTCTTCCTCCGCGTCGTCATCGTAATGTCCGTGGCCGCCGCGACTTCAAAAGAAGCGTCGGTGGGGTTGGGTGTGGAGTAAGAAGAAGTATTAGAGCTCCAAGAATGAGATGGACTACAACTTTACATGCTCATTTTGTACATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAAGATCTAACCCTAGCTCACGTCAAAAGCCATTTACAGGTTGGTGGGGTTTTATTTTCTTCCGATCTTTTAAATACATATAAATATTTAGAAAGTCAATTTAAACTGATTTTTAAGCTATTGAGCTCACTGATAATCTTAAAACGTCAAATGTACAGAACAGTGAAGAATACTGTGAAGGGAACAGATGATTGTGGAAGAACTGAGATTGAAGAAGATGCCATTGTTTTATCTTCTTCTGTTAAAAAATCTAACTTTCAATCACCTCATTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACATCGATGCACAAGAGTTGCGACAGAACCAAGTCAAACGCCGACGCTTTCGCTAAATCCAGAGGAATGAAGGTTGAAGGAAGCAATGGAGATTATCACGAGGCAATTACCATGCAACGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGGTGATGCAAAGGAGCTTGCCCTTCTCAATTGCTAA 888 41.78 MINSPSSLPDLSLQISLPMSIITPPPPPCDTNSSSSGKSDLSHENGLFRLGFEVGDMDVLPPRRHRNVRGRRDFKRSVGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQVGGVLFSSDLLNTYKYLESQFKLIFKLLSSLIILKRQMYRTVKNTVKGTDDCGRTEIEEDAIVLSSSVKKSNFQSPHLQRIQRSSLVTSMHKSCDRTKSNADAFAKSRGMKVEGSNGDYHEAITMQRINLEFTLGRPSWQLDYGDAKELALLNC 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23586496 23591643 + Lsi04G016070.1 Lsi04g01607 661656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01607 295 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 6 142 - -
Lsi04g01607 295 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 142 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lsi04g01607 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 142 IPR006447 GO:0003677
Lsi04g01607 295 MobiDBLite consensus disorder prediction 19 41 - -
Lsi04g01607 295 SUPERFAMILY Homeodomain-like 89 141 IPR009057 -
Lsi04g01607 295 Gene3D - 91 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01607 - - - bhj:120084780 384.415
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01607 Lsi08g01429 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01607 Lsi-Chr4:23586496 Lsi11g00046 Lsi-Chr11:549077 2.57E-17 dispersed
Lsi01g00237 Lsi-Chr1:2164720 Lsi04g01607 Lsi-Chr4:23586496 1.70E-18 transposed
Lsi01g01566 Lsi-Chr1:13884416 Lsi04g01607 Lsi-Chr4:23586496 6.04E-18 transposed
Lsi02g00254 Lsi-Chr2:2169724 Lsi04g01607 Lsi-Chr4:23586496 1.42E-27 transposed
Lsi04g01890 Lsi-Chr4:26055820 Lsi04g01607 Lsi-Chr4:23586496 5.42E-17 transposed
Lsi05g00266 Lsi-Chr5:3370938 Lsi04g01607 Lsi-Chr4:23586496 8.01E-11 transposed
Lsi09g00912 Lsi-Chr9:11144609 Lsi04g01607 Lsi-Chr4:23586496 2.74E-29 transposed
Lsi04g01607 Lsi-Chr4:23586496 Lsi08g01429 Lsi-Chr8:22526881 3.77E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25217 None None None None Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01607 Lsi_Chr04 FPKM 2.753299 2.141855 4.683328 4.096821 12.909801 11.999111 12.519553 3.161147 2.867585 2.487586