Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01609 ATGGAATTCATTTCATCCCACCTTAATCTCACCTTACTTGGACTCTGCCTCGTCCTTCTCTCCTCTGTTTTCATTTTGAATAAGCTAGCCACAGCCTACAAATACAGAGTCCCTCCAGAGGCAGCCGGCGGATGGCCGGTCATCGGCCACCTCCGACTGCTGCTCGGTCCGAAACTCCCCCACGAAACCTTAGGAGCCATGGCTGACAAATACGGACCAATATTCACCATTCGAGTTGGTGTTCACAAAGCCCTGGTTATAAGCAATTGGGAAGTGGCTAAAGAGTGTTACACAACTCTTGATTCACTCATTTCTTCTCGTCCCAAGAGTTTAGTTGGGCAATTGTTGGGTTACAACTTCGCCGGTTTTGGGTTCCGGCCAAATTACGATTCCTTTTACCGTAGCATGAGGAAAATCATAGCCTCGGAGCTGCTTTCGAATCGGCGTTTGGAAGAACAGAGAGAGGTCAGAGTTTGTGAGGTGAAGAAAGCGGTGAAGGAGGTTTATGAATTGTGGATGGGAAAGAGAGAGGATTTGGTTTTGGATATTGAAGAATGGATTGGGAACGTTAATTTGAATGTGATTTTGATGATGGTTTGTGGGAAGAAGTTGTTTGGGGAAGATGAAGAGATAATGAGACGGTGCCGGAAGGCGATGAGGGATTTTTTTGATTTGGGTGGACAGTTTATGGTGGGAGATGCGATTCCATTTCTGAGATGGCTGGATTTGGGTGGATATGAGAAGGCTATGAACATTACTTCAAGGGAATTGGATTGTTTTATTGGGGAATGGCTGAAAGAACACCGCCGGAAGAGAGACTCTGCAACTGCCGCCGCCGCCGCCGCCGCCGATGGTCAACGTGATTTCATGGATGTGATGCTTTCGATTCTTGAAGGAGGAATGGACCTTGCTGGCTATGATGCTGATACAGTCAACAAAGCTACTTGTTTGACTCTTATTAGTGGGGGAACCGACACAGTGACGGTAACGCTAACATGGGCGGTTTCGTTTTTACTAAACAACCGAGAGGCCTTAAGAAAGACACAAGAGGAGATGAACATCCATATCGGAAACAAAAGGCTAGTGAATGAATCAGACATAAGCAAATTAGTGTATCTCCAAGCTGTAGTGAAAGAGACATTAAGGTTGTACCCAGCAGGCCCATTGTCGGGGATTCGAGAGTTCAGCCAAGATTGCACACTTAGAGGTTATCACGTGGCTGCAGGCACACGCCTCATTACTAACCTTTGGAAGATACAGACGGACCCCCGAGTTTGGACCGAGCCTTTGGAGTTCAAGCCTGAGAGGTTTTTAGGTAACCAAAAGCAGGTGGATGTTAAGGGCCAGAATTTTGAATTGGGCCCGTTTGGGTATGGAAGAAGGGCTTGTCCTGGGCTTGGGTATGGAGTTCAAATGACCCAGTTGGTGCTGGCTAGTTTGATTCATTCATTTGAAATTGGAACTTGTTTTGATGAACCGGTTGATATGGCGGCTAACTTTGGACTTACCATTCATAGAGCCAACCCTCTTCAAGTCCTCCTCAAGCCTCGTCTTCTAGCAAATGCTTATGCTTGA 1575 46.67 MEFISSHLNLTLLGLCLVLLSSVFILNKLATAYKYRVPPEAAGGWPVIGHLRLLLGPKLPHETLGAMADKYGPIFTIRVGVHKALVISNWEVAKECYTTLDSLISSRPKSLVGQLLGYNFAGFGFRPNYDSFYRSMRKIIASELLSNRRLEEQREVRVCEVKKAVKEVYELWMGKREDLVLDIEEWIGNVNLNVILMMVCGKKLFGEDEEIMRRCRKAMRDFFDLGGQFMVGDAIPFLRWLDLGGYEKAMNITSRELDCFIGEWLKEHRRKRDSATAAAAAAADGQRDFMDVMLSILEGGMDLAGYDADTVNKATCLTLISGGTDTVTVTLTWAVSFLLNNREALRKTQEEMNIHIGNKRLVNESDISKLVYLQAVVKETLRLYPAGPLSGIREFSQDCTLRGYHVAAGTRLITNLWKIQTDPRVWTEPLEFKPERFLGNQKQVDVKGQNFELGPFGYGRRACPGLGYGVQMTQLVLASLIHSFEIGTCFDEPVDMAANFGLTIHRANPLQVLLKPRLLANAYA 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23606967 23610238 + Lsi04G016090.1 Lsi04g01609 661658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01609 524 PANTHER CYTOCHROME P450 82C3-RELATED 13 523 - -
Lsi04g01609 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Lsi04g01609 524 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 Pfam Cytochrome P450 43 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 Gene3D Cytochrome P450 30 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 SUPERFAMILY Cytochrome P450 44 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PANTHER CYTOCHROME P450 FAMILY PROTEIN 13 523 - -
Lsi04g01609 524 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01609 524 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01609 - - - cmax:111476968 696.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00500 Lsi-Chr1:4098361 Lsi04g01609 Lsi-Chr4:23606967 2.50E-159 dispersed
Lsi04g01609 Lsi-Chr4:23606967 Lsi04g01620 Lsi-Chr4:23688152 8.12E-172 dispersed
Lsi04g01608 Lsi-Chr4:23598781 Lsi04g01609 Lsi-Chr4:23606967 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01609 Lsi_Chr04 FPKM 16.119291 13.409715 19.024372 17.761532 15.807058 16.419416 15.448428 22.36367 21.318165 21.97563