Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01612 ATGAAAACGGGAGTTCGTGAGCTGAAGAAGGTCCCTTCGCCGCCGGGATCTTGGCCCATAATCGGCCACCTCCATTTGCTGAAAAAAGGGAAGCTCCCCCACCATGTTCTTGGAGCCATGGCTGACAAATATGGTCCAATCTTTAGGTTGAACCTCGGCTCTCGCCCTGCTTTGGTTGTTAGTAATTGGGAAATGGCCAAAGAAAGTATGTGTATTAATGACGCCGCTGCGGCCTCTCGCCCGGAGCTCTCAGTCTCAAAGCATTTCTCTTACGACTTCGCCATGTTTGGGTTGGCTTCTTACAGCCCTTACTGGCGCGACATGCGTAAAATTACCCACTTGGAACTCCTCTCCAACCCACGAGTCGATCAGGTTAAGAGCGTGATGTTTAGTGAAATGGAGACATCGTTGAGAGAGTTACAAGCAAGATGGGATGATGAGAGGAAAGAATTTGGGCAAATATCAGTAGAGATGAAGCATTGGTTTGGTGATGTAACACTGAATATGCTTCTTAAAGTCATCATTGGAAAACGATGTGTTGGTCCGAACGCCACTGAGGGAAATGAAAAAGATGCAAAACACTTGCAAATGGCAATTAGGGATTCTTTCCATTTGATGGGTGAAGGCTTATTAAGAGACTATATTCCTTTGATTGCAAAGCTTGGATTTGATGGACAAAATATGATTTCTGGAGGAACTGAAAGCAGCACTGTGACTCTAACATGGGCAATGTCTTTATTACTAAACAACCCATGGGCACTTGAAAAGGCTTATCAAGAGCTTGACCAAGTTGTAGGAAGAGACAGACGGTTGAAAGAGTCAGACATAAGCAACCTCTTCTATTTACAAGCCATTGTGAAAGAGACAATGAGACTGTATCCAGCAGGGCCTTTATTGGGCCCTCGTGAGTTCTACAAGGACTGTTTTGTAGCTGGCTATTTTGTCCCAAAATGCACCCAATTGATCCCCAACATTTGGAAGATCCAAACCGATCCTCGAGTTTGGCCCGACCCGTTCGAGTTCAAGCCTGAGCGGTTTTTAACGACCCATAAGGATGTGGATTTGAAAGGAAACAATTTCGAGTTGATTCCATTTGGGAGTGGAAGGAGAGGATGCCCTGCAATTGCATTTGGGCTTCAAATGGTGCATTTTGCTTTGGCTGGGTTTTTACATGCTTTTCATGTGAAAAATCCCACCCCCAAAGTGGTTGATATGGGTGAGCATTTTGGGATGGCGAATGAGAAAGTGGTTCCTCTTCATAAAATTAGGGGAGTTTGTGAGCTGAAGAAGGTGCCTTCACCGCCGGAAGCTTGGCCGATAATCGGCCACCTCCATTTGCTGAACGAAGGGAAGCTCCCCCACCATGTTCTTGGAGCCATGGCTGACAAATATGGCCCAATGTTTAGGTTGAACCTCGGCTCTCTCCATGCTTTGGTTGTTAGTAATTGGGAAATGGCCAAAGAAAGTATGTGTATTAATGACGCCGCGGCCGCCGCCTCTCGCCCGGAACTCTCAATTTTCTTCATCATCTATGAGATTTTATCATCGTTTGTCGTGGTTACTGTTTTTTAG 1572 45.74 MKTGVRELKKVPSPPGSWPIIGHLHLLKKGKLPHHVLGAMADKYGPIFRLNLGSRPALVVSNWEMAKESMCINDAAAASRPELSVSKHFSYDFAMFGLASYSPYWRDMRKITHLELLSNPRVDQVKSVMFSEMETSLRELQARWDDERKEFGQISVEMKHWFGDVTLNMLLKVIIGKRCVGPNATEGNEKDAKHLQMAIRDSFHLMGEGLLRDYIPLIAKLGFDGQNMISGGTESSTVTLTWAMSLLLNNPWALEKAYQELDQVVGRDRRLKESDISNLFYLQAIVKETMRLYPAGPLLGPREFYKDCFVAGYFVPKCTQLIPNIWKIQTDPRVWPDPFEFKPERFLTTHKDVDLKGNNFELIPFGSGRRGCPAIAFGLQMVHFALAGFLHAFHVKNPTPKVVDMGEHFGMANEKVVPLHKIRGVCELKKVPSPPEAWPIIGHLHLLNEGKLPHHVLGAMADKYGPMFRLNLGSLHALVVSNWEMAKESMCINDAAAAASRPELSIFFIIYEILSSFVVVTVF 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23621308 23634032 + Lsi04G016120.1 Lsi04g01612 661661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01612 523 PANTHER CYTOCHROME P450 82C3-RELATED 429 507 - -
Lsi04g01612 523 SUPERFAMILY Cytochrome P450 428 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 Pfam Cytochrome P450 432 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 Pfam Cytochrome P450 227 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 Pfam Cytochrome P450 12 180 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PANTHER CYTOCHROME P450 9 227 - -
Lsi04g01612 523 PANTHER CYTOCHROME P450 227 420 - -
Lsi04g01612 523 PANTHER CYTOCHROME P450 429 507 - -
Lsi04g01612 523 PRINTS P450 superfamily signature 284 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PRINTS P450 superfamily signature 231 248 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PRINTS P450 superfamily signature 363 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 Gene3D Cytochrome P450 422 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PANTHER CYTOCHROME P450 82C3-RELATED 9 227 - -
Lsi04g01612 523 PANTHER CYTOCHROME P450 82C3-RELATED 227 420 - -
Lsi04g01612 523 SUPERFAMILY Cytochrome P450 12 418 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 Gene3D Cytochrome P450 226 421 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 Gene3D Cytochrome P450 2 225 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 365 374 IPR017972 GO:0005506|GO:0016705
Lsi04g01612 523 PRINTS E-class P450 group I signature 324 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PRINTS E-class P450 group I signature 65 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PRINTS E-class P450 group I signature 372 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PRINTS E-class P450 group I signature 283 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PRINTS E-class P450 group I signature 362 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01612 523 PRINTS E-class P450 group I signature 41 60 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01612 - - - csv:101213457 605.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01612 Lsi-Chr4:23621308 Lsi04g01608 Lsi-Chr4:23598781 1.59E-13 dispersed
Lsi04g01615 Lsi-Chr4:23639282 Lsi04g01612 Lsi-Chr4:23621308 3.11E-34 dispersed
Lsi04g01610 Lsi-Chr4:23614313 Lsi04g01612 Lsi-Chr4:23621308 1.91E-32 proximal
Lsi04g01612 Lsi-Chr4:23621308 Lsi04g01614 Lsi-Chr4:23637827 8.85E-24 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g847 . Blo12g00929 . Bda03g00235 . Bpe04g00199 Bma04g00187 . . . . Cma09g00190 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01612 Csa03g04159 Chy04g00558 . . . . . . . . . . Cmo01g01939 Cmo09g00185 . . . . . . Bhi09g02032 . . . . . . Cla05g01986 . . . . . . . . . Cme04g00667
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01612 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0