Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01616 ATGGATCTTCCCTTTCCCAACATATCCACAACCAATCTTGCTCTACCTGGAATAATCTTCACCCTTCTCTTCTTTCTTTATGCTCTCTTCATTTCATTTGGCGTTCGTTGTAAGAGACGGCCGCCCCAACCCGGCGGTGCTTGGCCGATGATCGGCCACCTCCCTCTTCTCACCGGAAAAGAACTCATTCACAATACGTTGGGGAAATTGGCAGACGCTTATGGACCAATCTTTATGCTAAGATTAGGTACCAACAAAACCTTGATTGTTAGTGGCTGGGAAGTAGCAAAGGAGTGCTTTACTACCAACGACAAAAAATTTGCATCTCGCCCCAAATTTGCTGCTGCTAAGCTTCTTGGCTATAACTATGCCATGTTTGGGACTAGCCCATATAGTTCTCATTGGAGACATGTGCGTAAAATAGCCACGCTCGAACTCCTCGCTAACCACCGCCTCGAGAAGCTTCAACACATCCCGAGATTGGAGGTTCAAAGTTCGATTGACAAACTATATGAGTTATGCAGATCAAACAAGAAAGCGTTGGTGGAGATGGAGATGTGGTTTGGTGATATAACACTGAACACCATATTTAGGATGGTAATTGGAAAGCGATTCTCGACTGCTTTTGAAGGGAAGGCGTTTCTTCCCTCAGATTTGTTTCCATTTCTAAGATGGTTTGACTTTGGAGGGTACAAGAAAGCCATGAAGAAGACGGCAAAAATCATGGACGAGATGCTTGATAAATGGCTTATAGAGCATCGAGAGAGGAGAAATTCCGATGATGTGGTGACGACTAGGGTGGGTTGTGGATTTCACACCACCACAGCAGAAATGGTATGGGCTCTATCATTACTAGTGAGTAATGAAGAAGCACTGAAGAAAGTCCAATTAGAGTTGGATGAACAAGTTGGAAGAGACAGAGAAGTGAGAGAATCAGACATGAAAAATTTGATATATCTTCAAGCAGTTGTAAAGGAAACATTGCGTCTTTACCCTGCAGCACAACTGTCAGTCCCTCATGAATGTATAGAAGATTGTACAGTGGCTGGGTATCACATTCCAGCAGGAACAAGATTATGGGTGAATCTTTATAAACTCCAAAGAGATCCAAATGTTTGGGAGAGTCCTACAGAATTTCGTCCAGAAAGGTTTTTGACAAATGAAAAGAGTTTTGATGTGAAAGGACAAACTCCACAATTGATACCATTCGGAGCTGGTAGAAGAATTTGTCCTGGAATTTCATTTGCCATTCAAGTTATGAACTTGTCGCTTGCAAGATTACTTCATGAGTTTGAAATTAGACGACCATCTCAAGACCCACTTAACATGGAAGAAAGCGTTGCGTTGAATATTACCAAGAAAATTCCACTTGAGACAGACGTGGTTGGGATTATTGGTTCCGGTCGTTGTCAATGCGATCTACTTGTCTGA 1431 42.63 MDLPFPNISTTNLALPGIIFTLLFFLYALFISFGVRCKRRPPQPGGAWPMIGHLPLLTGKELIHNTLGKLADAYGPIFMLRLGTNKTLIVSGWEVAKECFTTNDKKFASRPKFAAAKLLGYNYAMFGTSPYSSHWRHVRKIATLELLANHRLEKLQHIPRLEVQSSIDKLYELCRSNKKALVEMEMWFGDITLNTIFRMVIGKRFSTAFEGKAFLPSDLFPFLRWFDFGGYKKAMKKTAKIMDEMLDKWLIEHRERRNSDDVVTTRVGCGFHTTTAEMVWALSLLVSNEEALKKVQLELDEQVGRDREVRESDMKNLIYLQAVVKETLRLYPAAQLSVPHECIEDCTVAGYHIPAGTRLWVNLYKLQRDPNVWESPTEFRPERFLTNEKSFDVKGQTPQLIPFGAGRRICPGISFAIQVMNLSLARLLHEFEIRRPSQDPLNMEESVALNITKKIPLETDVVGIIGSGRCQCDLLV 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23651418 23654689 + Lsi04G016160.1 Lsi04g01616 661665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01616 476 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 403 412 IPR017972 GO:0005506|GO:0016705
Lsi04g01616 476 PANTHER CYTOCHROME P450 38 458 - -
Lsi04g01616 476 SUPERFAMILY Cytochrome P450 41 458 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 Gene3D Cytochrome P450 35 264 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS P450 superfamily signature 410 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS P450 superfamily signature 269 286 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS P450 superfamily signature 322 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS P450 superfamily signature 401 410 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 Gene3D Cytochrome P450 265 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PANTHER CYTOCHROME P450 82C3-RELATED 38 458 - -
Lsi04g01616 476 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS E-class P450 group I signature 321 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS E-class P450 group I signature 362 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS E-class P450 group I signature 400 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 PRINTS E-class P450 group I signature 410 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 Pfam Cytochrome P450 265 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01616 476 Pfam Cytochrome P450 42 259 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01616 - - - csv:101208091 747.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01610 Lsi-Chr4:23614313 Lsi04g01616 Lsi-Chr4:23651418 2.79E-111 dispersed
Lsi04g01616 Lsi-Chr4:23651418 Lsi04g01620 Lsi-Chr4:23688152 0 dispersed
Lsi04g01616 Lsi-Chr4:23651418 Lsi04g01617 Lsi-Chr4:23657809 5.26E-153 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g850 . Blo12g00927 . Bda03g00236 . . Bma04g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01616 Csa03g04161 Chy04g00555 . . . . . . . . . . . Cmo09g00183 . . . . . . Bhi09g02035 . . . . . . Cla05g01983 . . . . . . . . . Cme04g00662
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01616 Lsi_Chr04 FPKM 11.977008 11.972259 8.966926 7.749035 10.537488 9.324541 9.359938 6.31477 6.651954 7.454742