Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01618 ATGGGATTGCGTGATCAAGTCTCCTCCGCCGGATTAATCCTCGCCGGAATCTTGTTTTTGTATGCCGTCTTTAGAATTTCCAAAAAAATTGGGGGTCAAGGGAAGAGACAACCACCTGAAGCCCGCGGTGGCTGGCCGGTGATCGGTCACCTCCATTTGCTGAGTCGAACAGAGCCAATTCAAATAACTTTAGCCAAAATGGCAGACACTTATGGCCCAATCTTTACGTTAAGGTTGGGCATGAAAAAGGCCTTAGTTGTAAGCAATTGGAAAATAGCAAGAGAGTGTTTTACTACAAACGATAAAATGTTTGCGTCTCGACCCAAAGTTGTTGCCGGGAAGCTACTCGGCTACGACTATGCCGTGATTGGGACAACCCTACGCGGTCCACTCCGGACCCATGTTCGGAAAATAGCCACCCATGAACTCCTCTCGAACCACCGACTCGATCAGCTCAAACACATTAGAAGTTCCGAAGTCGAGAGTTCGGTTAAGGGACTATATGAGTTATGGCATAGACGACGTAAAAACAAAGTGTTGGTGGAGATGAATACATGGTTTGGAGAATTAACTTTGAATACGATCTTTAGGATGGTGATTGGGGAAACATTTTCGAGGGCTTTCGAAGGTGGCAATGGGGAAAAGTATAGGAAGGCAATGAGGGATCTTTTTGATTTATTTGGAGTGTTTGTTCCGGGAGATTCGTTTCCATTTCTACGGTGGTTGGACTTGGGAGGATATGAAAAGACCATGAAGAAGACGGCTAAGATCTTGGACGAGATGTTTAATAAATGGCTTAAAGAACACCGACAAAAGGGAAATTCTATTGAGATTGGGATGAAAGAGTATGATTTCATGGATGCTATGATATTGGGTGGATTTGATACTACAGCAATAGCAATGCAATGGGGTCTTGCATTACTTCTCAACAATCCAGAAACACTGAAGAAACTCCAAGTTGAATTAGACGAACAAATTGGGAAAGGAAGGAAAGTGGAAGAATCAGATGTGAAAAATCTATTATATCTTCAAGCTGTAGTGAAGGAAACATTACGATTATACCCTGCAGTACCAATTGCACTCCCTCATGAATCTATAGAAAATTGCATAGTTGGTGACTACCATATCTCTACACAGACACGTTTGCTAGTGAATCTTCAAAAGCTCCATAGAGACCCACTTGTTTGGGATGATCCTAATGAATTTCGACCTGAAAGATTTCTTAGCAAGGAGAATCACTTTGACGTTAGAGGAAAAAATCCCTATCTAATACCATTTGGAAATGGTCGAATGATGTGTCCTGGAATCTCTTTTGCCCTCCAAATTGTGTCTCTCACACTTGCGAATCTTCTCCATATGTTTGAAGTTGGAAGGCCATCAAATGAATTGATCGATATGGAGATGGGTGTTGGAACAACGTGTATTAGAAAGAACCCTCTTGAAGTGGTTTTAAATCCACGTCTCCCGGCTGAAGTTTATGACTACTTTTAG 1491 42.19 MGLRDQVSSAGLILAGILFLYAVFRISKKIGGQGKRQPPEARGGWPVIGHLHLLSRTEPIQITLAKMADTYGPIFTLRLGMKKALVVSNWKIARECFTTNDKMFASRPKVVAGKLLGYDYAVIGTTLRGPLRTHVRKIATHELLSNHRLDQLKHIRSSEVESSVKGLYELWHRRRKNKVLVEMNTWFGELTLNTIFRMVIGETFSRAFEGGNGEKYRKAMRDLFDLFGVFVPGDSFPFLRWLDLGGYEKTMKKTAKILDEMFNKWLKEHRQKGNSIEIGMKEYDFMDAMILGGFDTTAIAMQWGLALLLNNPETLKKLQVELDEQIGKGRKVEESDVKNLLYLQAVVKETLRLYPAVPIALPHESIENCIVGDYHISTQTRLLVNLQKLHRDPLVWDDPNEFRPERFLSKENHFDVRGKNPYLIPFGNGRMMCPGISFALQIVSLTLANLLHMFEVGRPSNELIDMEMGVGTTCIRKNPLEVVLNPRLPAEVYDYF 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23666265 23671105 + Lsi04G016180.1 Lsi04g01618 661667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01618 496 PANTHER CYTOCHROME P450 82C3-RELATED 35 493 - -
Lsi04g01618 496 Pfam Cytochrome P450 39 291 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 Pfam Cytochrome P450 287 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 Gene3D Cytochrome P450 28 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS E-class P450 group I signature 301 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS E-class P450 group I signature 344 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS P450 superfamily signature 345 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PRINTS P450 superfamily signature 292 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01618 496 PANTHER CYTOCHROME P450 35 493 - -
Lsi04g01618 496 SUPERFAMILY Cytochrome P450 39 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01618 - - - csv:101208335 623.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01828 Lsi-Chr2:24107117 Lsi04g01618 Lsi-Chr4:23666265 5.67E-07 dispersed
Lsi04g01618 Lsi-Chr4:23666265 Lsi04g01620 Lsi-Chr4:23688152 0 dispersed
Lsi04g01615 Lsi-Chr4:23639282 Lsi04g01618 Lsi-Chr4:23666265 3.17E-26 proximal
Lsi04g01617 Lsi-Chr4:23657809 Lsi04g01618 Lsi-Chr4:23666265 0 tandem
Lsi04g01618 Lsi-Chr4:23666265 Lsi04g01619 Lsi-Chr4:23677131 1.10E-142 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g852 . . . Bda03g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01618 Csa03g04163 Chy04g00552 . . . . . . . . . . . Cmo09g00180 . . . . . . Bhi09g02046 . . . . . . Cla05g01981 . . . . . . . . . Cme04g00654
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01618 Lsi_Chr04 FPKM 4.236082 3.714994 12.738022 12.590372 2.530462 3.106266 2.566872 10.376174 9.837219 10.32835