Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01620 ATGGAACTCTCTCACTTCTCCTCACCCAACACCGTTGCCGGAATCTTCGCCGTCATCATCTTTCTCTATGCACTCTTCAAGATATATGAAGCAAGAGTCGGTGCTCATCGGAAGCGACTGCCACCTGAAGCCGGTGGCGCCTTGCCGCTGATTGGCCACCTCCATCTTTTAGCTAAAAATGAACCAGCCCACATAACGTTTGCCAAAATGGCCGATACGTACGGACCAATTTTTACGTTGAGATTGGGTGCATACACAAACTTGATTGTGAGCAATTGGGAAATAGCCAAAGAGTGTTTTACTACAAACGATAGAATCTTTGCCTCTCGTCCAAAGCTCGTGGCCTCAAAGCTGTTGGGGTATGACTATGCCATGTTGGGGTTGAGCCCATATGGTCCACATTGGCGCCATGTCCGCAAACTAGCCATGCTCGAACTCTTAACCAACCACCGGCTCGAGAAGCTCCAACACATAAGGGTATTTGAGGTCCAAACTTCGATTAAAAAGTTGTATGATTTATGTGTCAAAAACAAGAATGATAATGAGAAGAAAATATTGGTGGAGATGAAGACATGGTTTGGAGATATAACTCTAAACACCATATTTAGGATCGTGGTCGGAACGCAATTCTCAACGGCGGTGGATGCGAGTGGTAATGATAATGAAGAGTATCGGAAGGCATTGAGGGATTTCTTTGAATGGTTTGGAGTGTTTATTCCTTCAGATTCATTTCCATTTCTAAAGTGGTTGGATTTAGGTGGACATGAGAAAGCCATGAAAAAGACTGCCAAAGTGCTTGACGAAGTGTTTGATAAATGGCTTCAAGAGCATCAACAAAAGAGGAATGAGTTTGGTGAAGTAAAGATGGAAGAGCATGACTTCATGGATGTGATGCTTTCTAAAGTTAAAGATGACGGACAACTTCCTAAATATGACGCTCATACTGTCACCAAGGCTACATGTTTGGCTCTTATATTGGCTGGATATGACACTACAACAGTAACAATGATATGGGCTCTTTCTTTACTTCTTAATAATAAAGAAGTACTTAAGAGAGCTCAAGTTGAGTTGGACGAACATGTTGGAAGACAAAGACAAGTGAGAGAATCCGATATCAAGAATTTATTGTATCTTCAAGCTATTGTGAAGGAGACATTACGTTTGTATCCTGCAGCGCCGATTCTAATACCTCATGAATCGATTGAGGATTGTATGGTTAGTGGTTACCACATTCCAGCAGGAACACGACTCATAGTAAATGTTCAAAAGCTTCAAAGGGATCCACAAGTATGGGAGGATCCTAGTGAATTTCAACCGGAAAGATTTTTAACAAGTCAAAAAGATTATGATGTTAAAGGGCAGAGTCCTCAGTTAATACCATTTGGAAGTGGTCGAAGAATGTGTCCTGGAATCTCGTTTGCTTTGCAGGTTATGCATTTAACACTTGCAAATTTGCTTCATGGGTTTAAAATTAGTAGGCCATTTGAAGAGCTTCTCGACATGGAGGAGAGTGCTGGAATGACAAGTATTAAAAAGAATCCACTTGAGGTTGTTTTAACTCCTCGCCTTCTACCTCAAGTTTATGAGTGA 1590 41.57 MELSHFSSPNTVAGIFAVIIFLYALFKIYEARVGAHRKRLPPEAGGALPLIGHLHLLAKNEPAHITFAKMADTYGPIFTLRLGAYTNLIVSNWEIAKECFTTNDRIFASRPKLVASKLLGYDYAMLGLSPYGPHWRHVRKLAMLELLTNHRLEKLQHIRVFEVQTSIKKLYDLCVKNKNDNEKKILVEMKTWFGDITLNTIFRIVVGTQFSTAVDASGNDNEEYRKALRDFFEWFGVFIPSDSFPFLKWLDLGGHEKAMKKTAKVLDEVFDKWLQEHQQKRNEFGEVKMEEHDFMDVMLSKVKDDGQLPKYDAHTVTKATCLALILAGYDTTTVTMIWALSLLLNNKEVLKRAQVELDEHVGRQRQVRESDIKNLLYLQAIVKETLRLYPAAPILIPHESIEDCMVSGYHIPAGTRLIVNVQKLQRDPQVWEDPSEFQPERFLTSQKDYDVKGQSPQLIPFGSGRRMCPGISFALQVMHLTLANLLHGFKISRPFEELLDMEESAGMTSIKKNPLEVVLTPRLLPQVYE 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23688152 23690139 + Lsi04G016200.1 Lsi04g01620 661669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01620 529 Pfam Cytochrome P450 45 514 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 196 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 SUPERFAMILY Cytochrome P450 47 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PANTHER CYTOCHROME P450 38 529 - -
Lsi04g01620 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Lsi04g01620 529 Gene3D Cytochrome P450 30 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01620 529 PANTHER CYTOCHROME P450 82C3-RELATED 38 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00501 Lsi-Chr1:4112726 Lsi04g01620 Lsi-Chr4:23688152 1.68E-31 dispersed
Lsi04g01609 Lsi-Chr4:23606967 Lsi04g01620 Lsi-Chr4:23688152 8.12E-172 dispersed
Lsi04g01616 Lsi-Chr4:23651418 Lsi04g01620 Lsi-Chr4:23688152 0 dispersed
Lsi04g01617 Lsi-Chr4:23657809 Lsi04g01620 Lsi-Chr4:23688152 0 dispersed
Lsi04g01618 Lsi-Chr4:23666265 Lsi04g01620 Lsi-Chr4:23688152 0 dispersed
Lsi04g01620 Lsi-Chr4:23688152 Lsi04g01622 Lsi-Chr4:23705834 0 dispersed
Lsi04g01619 Lsi-Chr4:23677131 Lsi04g01620 Lsi-Chr4:23688152 8.02E-175 tandem
Lsi04g01620 Lsi-Chr4:23688152 Lsi04g01621 Lsi-Chr4:23696214 2.96E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01620 - - csv:101208335 947.962