Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01622 | ATGGAATTTTCTCAACTCTCTTCATCGGCGACCATCATCGCTGGAATCTTCTCCCTTCTCCTCTTTCTCTATGCTCTCTTCAACATATCTACTAGAGTTGTCGGAGCTCATCGAAATAAACTCCCACCTGAACCCATCGGTGGTTGGCCATTGATTGGTCACCTCCATTTGCTAAGTGCAACAGAACCAGCTCACATAACCTTTGCAAAGATGGCAGATACTTGCGGACCCATCTTTACTTTGAAATTAGGTATGAAAAAAGCCTTGATTGTGAGCAGTTGGGAAATAGCAAAAGAGTGTTTTACTACAAACGATAGAATCTTTGCCTCTCGTCCAAAGCTCGTGGCCTCAAAGTTGTTGGGATATAACTATACCATGTTGGGGTTGATCCCATATGGTCCACAATGGCGCCATCTCCGTAAACTAGCCACGCTCGAACTCTTAACGAACCATCGCCTCGAGAAGCTCCAACACATAAGGGTGTTCGAAGTCCAAACTTCGATTAAGAAGCTGTATGAGTTATGTATCAAAAACAATAATAATAATGAGAAGAAAGCGTTGGTGCAGTTGAATTCGTGGTTTGGAGATATAACTCTAAACACAATATTTAGGTTAGTGGTTGGAAAGAGATTCTCAACGGCGGTGGATGGGAGTAGTAATGATAATGAAGAGTATCTGAAGGCATTGAGGGATTTTTTTGAATGGTTTGGAGTGTTTGTCCCTTCAGATTCATTTCCATTTCTCAAGTGGTTTGATTTGGGAGGACATGAGAAGGCCATGAAGAAAACGGCTAAAATTCTTAACAAAGTGTTTGATAAATGGCTTCAAGAACATCGACAAAAGAGAAATTTTGAAGAGCAGGACTTCATGGATGTGATGCTTTCCGCAGTTAAAGATGGTGGAGAACAACTTCCAAGCTGTGATGCAGATACAATTATCAAGTCTTCATGTTTGTCTCTCATATTGGCGGGTTCTGACACTACAACAATAACAATGATATGGGCCCTTTCTTTATTGCTCAACAATCAAGAAGCACTCAAGAGAGCTCAACTTGAATTAGATGAACAAGTTGGGAGACACAAACAAGTTAAAGAATCGGATATGAGAAATCTCAAATATCTCCAAGCAATTGTGAAGGAAACATTGCGCTTGTATCCTGCAGGACCGCTTGGAATTCCTCATGAATCGATGGAAGATTGTAAAATTGCTGGCTACCATATTCCAGCAGGGACACGGCTTATAGTTAATATACAGAAGCTTCAAAGAGACCCAGTTGTGTGGAAAGATCCTTGTGCATTTCGACCAGAAAGATTTCTAACAAGTCACAAACATTTTGAAGTTAGAGGAAAAAGCCCTCAGTTGATACCATTTGGAAGTGGGCGCAGGATGTGTCCAGGGATCTCTTTTGCCCTTCAAATTATGCATTTAACACTTGCAAATCTACTTCATGGGTTTGAGATTGAAAGACCATCTAAAGAGTTACTCAATATGGAAGAAAGTGCTGGTATGACCAGCATTAAAAAAGATCCACTCCAAGTTATTTTAAGTCCACGCCTCCAACCTCAAGTTTATGATTGA | 1578 | 40.68 | MEFSQLSSSATIIAGIFSLLLFLYALFNISTRVVGAHRNKLPPEPIGGWPLIGHLHLLSATEPAHITFAKMADTCGPIFTLKLGMKKALIVSSWEIAKECFTTNDRIFASRPKLVASKLLGYNYTMLGLIPYGPQWRHLRKLATLELLTNHRLEKLQHIRVFEVQTSIKKLYELCIKNNNNNEKKALVQLNSWFGDITLNTIFRLVVGKRFSTAVDGSSNDNEEYLKALRDFFEWFGVFVPSDSFPFLKWFDLGGHEKAMKKTAKILNKVFDKWLQEHRQKRNFEEQDFMDVMLSAVKDGGEQLPSCDADTIIKSSCLSLILAGSDTTTITMIWALSLLLNNQEALKRAQLELDEQVGRHKQVKESDMRNLKYLQAIVKETLRLYPAGPLGIPHESMEDCKIAGYHIPAGTRLIVNIQKLQRDPVVWKDPCAFRPERFLTSHKHFEVRGKSPQLIPFGSGRRMCPGISFALQIMHLTLANLLHGFEIERPSKELLNMEESAGMTSIKKDPLQVILSPRLQPQVYD | 525 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23705834 | 23708632 | + | Lsi04G016220.1 | Lsi04g01622 | 661671 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01622 | 525 | SUPERFAMILY | Cytochrome P450 | 42 | 518 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PANTHER | CYTOCHROME P450 82C3-RELATED | 40 | 524 | - | - | |
| Lsi04g01622 | 525 | Pfam | Cytochrome P450 | 43 | 513 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | P450 superfamily signature | 376 | 387 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | P450 superfamily signature | 464 | 475 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | P450 superfamily signature | 323 | 340 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | Gene3D | Cytochrome P450 | 30 | 515 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | Coils | Coil | 346 | 366 | - | - | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 312 | 329 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 416 | 440 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 96 | 117 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 72 | 91 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 375 | 393 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 332 | 358 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PRINTS | E-class P450 group I signature | 197 | 215 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi04g01622 | 525 | PANTHER | CYTOCHROME P450 | 40 | 524 | - | - | |
| Lsi04g01622 | 525 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506|GO:0016705 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01619 | Lsi-Chr4:23677131 | Lsi04g01622 | Lsi-Chr4:23705834 | 8.81E-174 | dispersed | |
| Lsi04g01620 | Lsi-Chr4:23688152 | Lsi04g01622 | Lsi-Chr4:23705834 | 0 | dispersed | |
| Lsi04g01622 | Lsi-Chr4:23705834 | Lsi04g01624 | Lsi-Chr4:23738506 | 0 | dispersed | |
| Lsi04g01621 | Lsi-Chr4:23696214 | Lsi04g01622 | Lsi-Chr4:23705834 | 1.49E-177 | tandem | |
| Lsi04g01622 | Lsi-Chr4:23705834 | Lsi04g01623 | Lsi-Chr4:23725363 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01622 | - | - | csv:105434433 | 864.759 |