Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01624 ATGGAAAAGCTTCATGTCTTCCTCGGAATAATCTTTCCCCTTCTCTTATTTTTCTATGCTCTCTTCACTCGGTCTCGGAGATTCATCGCTCAACAAAAGCAGCTTCCACCGGAGGCCGGTGGCGCTTGGCCGGTGATTGGCCACCTCCTTCAACTAAATGCAAGCGAACCAACTCAAATAACATTGGCCAAAATGGCGGATGCGTATGGACCGATATTCACGTTTAGATTTGGTATGAAAAAGGCATTGATTGTGAGCAACTGGGAAATAGCAAAAGAGTTTTTTACTACAAACGACAGAGTATTTGCGTCTCGTCCAAAGCTTGTAGCCTCAAAGCTCCTTGGCTATGACTATGCCATGTTGGGGTTCAGTCCCTACACTCCACACTGGCGCCATGTACGCAAAACAGTCACGCTTGAACTCTTCACGAACCACCGCGTGGACCAACTCCAACACATAAGAGCATTTGAGGTCAAGACCTGGATGAAGGAACTCTATGACTCATGGCTCAAAATTAGTAGTAATAAGAAAGGTGATAAAGTGGTGGTGGAAATGAAAAAGAGATTGGCAGACATGACACTGAATACCATATTCAAGATAGTGATTGGGAAGAGTTTCTCCACTATGGAACATGGTAGTGAAATTTTTCATAAGGTGTTGATAGATTTCTTTGGATTGTTTGGTATATTCATTCCATCAGATTCATTTCCATTTTTGAGTTGGTTGGACTTGGGAGGACATGAGAAGGCAATGAAGAAGACAGCCAAAATAATAGATGAGGTGTTTGATAAATTCCTTAAAGAGCATCGAGAGAGGAAAATTAATAATTGTGATGAAGTGGAGATGAAGGAACAAGATTTCATGGATGTGATGATTTCAACTGTTAAAGATGATGAACAACATTTCAGTTGCGATGTTGATACAGTCATTAAAGCTACATGCCTGAATATGATATTAGGTGGATTTGACACTACGTCAATTACAATGACATGGGCTCTTTCTTTACTTCTCAACAATAAAGAAGCACTCAAGAAGGCTCAACTTGAATTAGACGAACAAGTTGGGAGAGAAAGACAAGTAAACGAGTCAGATTTGAAAAATCTACCATATCTTCAAGCTATTGTTAAGGAAACTCTACGGCTGTATCCAGCTGCGCCGCTCTTAGTCCCTCATGAATCTATAGAAGATTGCACAGTTGTTGGCTATCACATCCCCAAAGGAACACGACTCATAGTTAATGTTCAAAAGCTTCAAAAAGACCCACGTTTTTGGGAGGATCCTTGTGAATTTCATCCCGAAAGGTTTCTAACAAGTCAAAAGAATTTTGATGTTAGAGGACAAAGTCCACAGTTGATACCATTTGGAAATGGCCGAAGGATGTGCCCTGCAATCTCATTTGCCCTTCAAATAATTCATCTTACACTTTCAAACTTTCTCCATGGCTTTGAAATTGACCGGCCATCAGAAGAACTGCTTGACATGGAAGAGGGTATTGGATTGACAAGCATTAAAAAAGCTCCACTCCCAGTTGTTTTAACTCCACGCCTGCCTTCCCAAGTTTATGAATAA 1569 40.85 MEKLHVFLGIIFPLLLFFYALFTRSRRFIAQQKQLPPEAGGAWPVIGHLLQLNASEPTQITLAKMADAYGPIFTFRFGMKKALIVSNWEIAKEFFTTNDRVFASRPKLVASKLLGYDYAMLGFSPYTPHWRHVRKTVTLELFTNHRVDQLQHIRAFEVKTWMKELYDSWLKISSNKKGDKVVVEMKKRLADMTLNTIFKIVIGKSFSTMEHGSEIFHKVLIDFFGLFGIFIPSDSFPFLSWLDLGGHEKAMKKTAKIIDEVFDKFLKEHRERKINNCDEVEMKEQDFMDVMISTVKDDEQHFSCDVDTVIKATCLNMILGGFDTTSITMTWALSLLLNNKEALKKAQLELDEQVGRERQVNESDLKNLPYLQAIVKETLRLYPAAPLLVPHESIEDCTVVGYHIPKGTRLIVNVQKLQKDPRFWEDPCEFHPERFLTSQKNFDVRGQSPQLIPFGNGRRMCPAISFALQIIHLTLSNFLHGFEIDRPSEELLDMEEGIGLTSIKKAPLPVVLTPRLPSQVYE 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23738506 23740949 + Lsi04G016240.1 Lsi04g01624 661673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01624 522 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 Pfam Cytochrome P450 39 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 Gene3D Cytochrome P450 21 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01624 522 PANTHER CYTOCHROME P450 34 522 - -
Lsi04g01624 522 PANTHER CYTOCHROME P450 82C3-RELATED 34 522 - -
Lsi04g01624 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Lsi04g01624 522 SUPERFAMILY Cytochrome P450 42 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01624 - - - csv:101212976 863.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01622 Lsi-Chr4:23705834 Lsi04g01624 Lsi-Chr4:23738506 0 dispersed
Lsi04g01624 Lsi-Chr4:23738506 Lsi04g01627 Lsi-Chr4:23764211 0 dispersed
Lsi04g01623 Lsi-Chr4:23725363 Lsi04g01624 Lsi-Chr4:23738506 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g857 . Blo12g00923 Bda01g00555 Bda03g00240 Bpe02g00413 . . . . . . Cma09g00183 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01624 Csa03g04166 Chy04g00549 . . . . . . . . . . Cmo01g01943 Cmo09g00179 . . . Car09g00162 . . Bhi09g02056 . . . . . . . . . . . . . . . . Cme04g00637
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01624 Lsi_Chr04 FPKM 53.144405 56.208321 11.804766 12.641814 36.576424 28.567829 35.632317 6.041237 5.403029 6.521228