Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01627 ATGATGGCTGTATTTCTGCTAATATTGTTTTTCTATGCTCTCTTCTGCGTTTTATCTCGAAGATTATTATTCAGTTCTCAACATCGGAAGAAATCGCAGCCACCTGAAGCCAGTGGCGCCTGGCCGGTGATCGGCCATCTTCATCTACTAGGTGGCTCAGAACCTGCACACAAAATCTTGGGGGCTATGGCGGATGTTCATGGACCCATTTTTACATTGAAATTGGGAATGCATAGAGCAGTGCTTGTGAGCAATTGGGAAATAGCAAAAGAGTGTTTTACTACGAACGACAGAATATTTGCATCCCGTCCCAAACTTACTGCCGCAAAGCTTCTTGGCTATAATAATTCCATGGCTGGGTTGTGCGAGTATGGTCCATACTGGCGCCATGTGCGCAAAATAATCTCACTTGGACTCCTCACGAGCCACCACATGAAGCAGCTCCAACTCATCTTAGAATCAGAGATTCAGAGTTCGATTGAAAAATTATACGATTTATGGACGAACCGCACAAAGGAAGCGTCATTATTGGTGGAAATGAAGACGTGGTTTGAAGACATAACCCTGAACACCATGTTCAGGATGGTGGTTGGAAAGCGATTCTCCACTGATTTGGAAGGCAGTGGAAATCAAGATTACCGAAAGGCGTTTAGAGATTTTGTTGATTTGTTCGGAGCGTTCGTGCCCTCCGATTCGTTTCCGTTTTTGAGTTGGTTGGATTTGGGAGGGTATGAAAAGGCCATGAAGAAGACCGCTGAAGTGGTAGATGAAGTGCTTGATAAATGGATCAAAGAGAGGAAGAATTCAGGTGATCATGAACAAGATTTCATGGACTTGTTGCTTTCCGCTGTTAAAGAAGATGAAGAACTTTCCGGCTATGATGGAGACTCGTTCGTAAAAGCTAATTGTTTGGTATCAACAACAATGACATGGGCTCTTGCTTTACTTCTCAACAACGAAGAAGCACTTAAGAAAGCCCAATTGGAATTAGAAGAACATGTGGGAAGCCAAAGACAAGCGAAAGCATTAGATATAAATGATGTAAGATATGTCCAAGCCATTGTGAAGGAAACATTGCGTTTGTATCCTCCAGCGCCACTATTACTCCCTCATGAATCAACAGAGGATTGCAACATTCTCAACTACAATATCCCTGCAAGAACACGCCTAATAGTAAATATTCAAAAGCTCCAAAGAGACTCACTAGTTTGGAAGGATCCTAACGAATTTCGACCCGAAAGATTTCTAACAACTCAAAAAGACATGGACGTTAAAGGACAGAATCCCCAACTGATTCCATTTGGAAGTGGTAGAAGAATGTGTCCTGGAATATCATTTGCCCTCAATGTTATGTCTCTAACGCTTGCAAATTTGATTCATGGGTTCGAAATTGGTAGGCCATCAAATGAACTACTCGATATGGAGGAGAGTCATGGATTGGTTAGTGTTAGAAAAGCTCCACTTGAG 1467 42.4 MMAVFLLILFFYALFCVLSRRLLFSSQHRKKSQPPEASGAWPVIGHLHLLGGSEPAHKILGAMADVHGPIFTLKLGMHRAVLVSNWEIAKECFTTNDRIFASRPKLTAAKLLGYNNSMAGLCEYGPYWRHVRKIISLGLLTSHHMKQLQLILESEIQSSIEKLYDLWTNRTKEASLLVEMKTWFEDITLNTMFRMVVGKRFSTDLEGSGNQDYRKAFRDFVDLFGAFVPSDSFPFLSWLDLGGYEKAMKKTAEVVDEVLDKWIKERKNSGDHEQDFMDLLLSAVKEDEELSGYDGDSFVKANCLVSTTMTWALALLLNNEEALKKAQLELEEHVGSQRQAKALDINDVRYVQAIVKETLRLYPPAPLLLPHESTEDCNILNYNIPARTRLIVNIQKLQRDSLVWKDPNEFRPERFLTTQKDMDVKGQNPQLIPFGSGRRMCPGISFALNVMSLTLANLIHGFEIGRPSNELLDMEESHGLVSVRKAPLE 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23764211 23766763 + Lsi04G016270.1 Lsi04g01627 661676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01627 489 SUPERFAMILY Cytochrome P450 39 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 Pfam Cytochrome P450 37 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PANTHER CYTOCHROME P450 82C3-RELATED 32 489 - -
Lsi04g01627 489 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Lsi04g01627 489 Gene3D Cytochrome P450 21 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PANTHER CYTOCHROME P450 32 489 - -
Lsi04g01627 489 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01627 489 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01627 - - - csv:101212735 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01623 Lsi-Chr4:23725363 Lsi04g01627 Lsi-Chr4:23764211 4.07E-175 dispersed
Lsi04g01624 Lsi-Chr4:23738506 Lsi04g01627 Lsi-Chr4:23764211 0 dispersed
Lsi04g01625 Lsi-Chr4:23746818 Lsi04g01627 Lsi-Chr4:23764211 8.29E-135 dispersed
Lsi04g01627 Lsi-Chr4:23764211 Lsi04g01630 Lsi-Chr4:23779747 1.77E-06 dispersed
Lsi04g01629 Lsi-Chr4:23777172 Lsi04g01627 Lsi-Chr4:23764211 9.25E-110 dispersed
Lsi04g01626 Lsi-Chr4:23753974 Lsi04g01627 Lsi-Chr4:23764211 5.51E-66 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g858 . Blo12g00922 . Bda03g00241 . . Bma04g00191 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1876 . . . Lsi04g01627 Csa03g04169 Chy04g00548 . . . . . . . . . . . Cmo09g00178 . . . . . . Bhi09g02057 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01627 Lsi_Chr04 FPKM 14.129898 16.989233 4.66401 5.108914 5.927131 7.587101 5.908096 0.205473 0.0 0.092539