Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01631 ATGTTCTCAAAAGCTTTCACGTTTAGTAAAGACATTCAGAACTTGGCTTCTGAAATGTTCCCAGGCCAAGTCGAAGCCGCTTTGAAGGAGGCTCCTGGTGCCAAAACGGCGCCGGATAGAGTTATCGTCGCCGTCAAGGCTGAGAGAGTGATTTCCAAATCTGCACTGGCTTGGGCTCTTACTCATGTAGTTCGTCCTGGTGACTGTATAACCCTACTCGCCGTCTTCTCTGTCGAGAAAACTGGCAGAAGGTTCTGGAATTTTCACAGATGGAGTGGGGATTGTGCGAGTGCTGTTCAGGAGAATCTCCCAGATCGGGTTCATGAGATCTCCGAGTCTTGTTCTCAGATGGTGCTTCATTTCCACAATCAAGTTGAGGTTCAAGTGAGGATTAAAGTGGTCACAGGAACACAAGGAGGGTCTGTCGCTGCTGAAGCAAAGTTAAAAGGAGTTAACTGGGTCATACTAGACAGGAAATTGAAGAATGAGGTAAAGAGTTGCCTGGAAGAACTAAGCTGCAATATTGTTACAATGAAAGGGTCTCAGCCGAAAGTTCTCAGGCTTAATTTGGAGTGCTGGAGTGAACCTCAAACTCCTTTCTTTTCGGCTAATTCTTCTCCTGTTCGAAAAAGTCAACAAAATAGGATGAAGCAGACAACTCCATTAGCAAGCAGACCAGAAGAAGAACTTGGTGCCTCGTTCAGAAAAACCTCAAAAGAAGGATCAAAATTGGGGTCTCAGCCGAAAGTTCTCAGGCTTAATTTGGAGTGCTGGAGTGAACCTCAAACTCCTTTCTTTTCGGCTAATTCTTCTCCTGTTCGAAAAAGTCAACAAAATAGGATGAAGCAGACAACTCCATTAGCAAGCAGACCAGAAGAAGAACTTGGTGCCTCGTTCAGAAAAACCTCAAAAGAAGGATCAAAATTGGGTACTGATGCAGTGTCTTCTATTTTCCTTGTATATGAGCAAAACCCACTATATGAAGGAAACTTGAAAGGAAATCACTTGCCAATTAATGAGACTAACAATTTAAGCATTTCAGTATCTTCATCCAACTCAATGGAAGAAAAAGTTCTCTCTCTACCCCCAACATCTGTGGCTTCAAATCAAAAATGTGTCTATTGGATTCAGAACCATAACAACATTTCTGAAGGAAAAACTCTATCTAAGTCCAAAAAAAGATTCCTTAGGTTTGCCTCAACTCCCAAGGTGCCATTCAGTAATCCTTCAAGTCTTGAAAAGAGTACGACTTTTGAAGATATGAGGCTCAACCAGTCTGAGAGAAAAGACTACATTGTGGACTCAAATATTAGGGATGCTGTCTCTTTGGGCAGAGCATCCTCTGCACCCCCTCCTCTGTGCTCAATATGTCAGCACAAGGCGCCAGCTTTTGGAAAACCTCCCAGACAGTTCTCCCTCAAAGAGCTCGAAGAAGCTACTGACAGATTTTCGGATATGAACTTCTTGGCAGAAGGTGGTTTTGGAATTGTTCATAGAGGAATCTTGAGAGATGGTCAAGTCGTAGCTGTGAAGCAGTTGAAATGTGGAGGCTTACAAGCAGATGCTGATTTTTGTCGTGAAGTTCGAGTGTTGAGTTGTGCACAACACAGAAACGTAGTGTTGCTGATTGGGTTTTGTATTGAAGGCTCAATGAGGTTATTGGTTTATGAGTACATATGCAATGGTTCATTGGATTTCCATTTACATGTTTATCATAAAGTCGGGTGTATAGTGCATAGAGACATGCGACCTCACAATATCCTCCTAACACATGATTTTGAACCCATGGTTGCTGATTTCGGGCTGGCAAGGTGGCATTCTAAATGGTCTACCAGTGTTGAGGAGCAAGTCGTTGGAACTTCAGGGTATCTAGCACCAGAGTACATCAATGGCGGTATGGTATCACATAAAGTGGATGTATATGCATTTGGCATGGTTTTATTAGAGTTGATCAGTGGCAGAAGAAGCTGTGAGCTGCACCGTCTCGAGGGAAAACAATTCATATCAGAATGGTTCCACCCCATCTCTGCGTTGCAAATTCAACATTTACTAGCTAGTAGTAATCATTTAGTAGATCCATGCATGGCGTCCGAGCAATCCCCTGACTTCTGTTATCAACTACATTCTATGATTCGTGCCGCTTCCTTGTGCCTATGTCCAGATCCTGAATCAAGACCCTCAATGTCAAAGATTCTTCGAGTGCTTGAAGGAGGAGATCCAGTTGTTCCTCTTGGGTTAGACTTTGACCCAGTCGGGTGCAGAAGTGCACACTTGGAAGGTCTTACGACTCACAACCAAATCGAAGCAAGAAGAAGCCATACTCGTACACTTTCACAATGA 2340 43.38 MFSKAFTFSKDIQNLASEMFPGQVEAALKEAPGAKTAPDRVIVAVKAERVISKSALAWALTHVVRPGDCITLLAVFSVEKTGRRFWNFHRWSGDCASAVQENLPDRVHEISESCSQMVLHFHNQVEVQVRIKVVTGTQGGSVAAEAKLKGVNWVILDRKLKNEVKSCLEELSCNIVTMKGSQPKVLRLNLECWSEPQTPFFSANSSPVRKSQQNRMKQTTPLASRPEEELGASFRKTSKEGSKLGSQPKVLRLNLECWSEPQTPFFSANSSPVRKSQQNRMKQTTPLASRPEEELGASFRKTSKEGSKLGTDAVSSIFLVYEQNPLYEGNLKGNHLPINETNNLSISVSSSNSMEEKVLSLPPTSVASNQKCVYWIQNHNNISEGKTLSKSKKRFLRFASTPKVPFSNPSSLEKSTTFEDMRLNQSERKDYIVDSNIRDAVSLGRASSAPPPLCSICQHKAPAFGKPPRQFSLKELEEATDRFSDMNFLAEGGFGIVHRGILRDGQVVAVKQLKCGGLQADADFCREVRVLSCAQHRNVVLLIGFCIEGSMRLLVYEYICNGSLDFHLHVYHKVGCIVHRDMRPHNILLTHDFEPMVADFGLARWHSKWSTSVEEQVVGTSGYLAPEYINGGMVSHKVDVYAFGMVLLELISGRRSCELHRLEGKQFISEWFHPISALQIQHLLASSNHLVDPCMASEQSPDFCYQLHSMIRAASLCLCPDPESRPSMSKILRVLEGGDPVVPLGLDFDPVGCRSAHLEGLTTHNQIEARRSHTRTLSQ 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23798960 23806421 + Lsi04G016310.1 Lsi04g01631 661680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01631 779 PANTHER OS01G0253100 PROTEIN 573 769 IPR045271 GO:0004714|GO:0006468
Lsi04g01631 779 PANTHER OS01G0253100 PROTEIN 245 571 IPR045271 GO:0004714|GO:0006468
Lsi04g01631 779 PANTHER OS01G0253100 PROTEIN 35 238 IPR045271 GO:0004714|GO:0006468
Lsi04g01631 779 MobiDBLite consensus disorder prediction 203 221 - -
Lsi04g01631 779 Pfam Protein tyrosine and serine/threonine kinase 488 569 IPR001245 GO:0004672|GO:0006468
Lsi04g01631 779 MobiDBLite consensus disorder prediction 268 286 - -
Lsi04g01631 779 ProSiteProfiles Protein kinase domain profile. 483 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01631 779 MobiDBLite consensus disorder prediction 268 306 - -
Lsi04g01631 779 ProSitePatterns Tyrosine protein kinases specific active-site signature. 577 589 IPR008266 GO:0004672|GO:0006468
Lsi04g01631 779 MobiDBLite consensus disorder prediction 203 245 - -
Lsi04g01631 779 SUPERFAMILY Protein kinase-like (PK-like) 468 737 IPR011009 -
Lsi04g01631 779 Pfam Protein kinase domain 571 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01631 779 Gene3D Transferase(Phosphotransferase) domain 1 559 739 - -
Lsi04g01631 779 Gene3D Phosphorylase Kinase; domain 1 454 558 - -
Lsi04g01631 779 CDD USP_Like 40 156 - -
Lsi04g01631 779 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 573 769 - -
Lsi04g01631 779 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 35 238 - -
Lsi04g01631 779 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 245 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01631 - - - csv:101207605 1005.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01631 Lsi-Chr4:23798960 Lsi06g00265 Lsi-Chr6:2982630 5.39E-35 dispersed
Lsi04g01631 Lsi-Chr4:23798960 Lsi07g00562 Lsi-Chr7:5966015 8.02E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g859 . Blo12g00921 . Bda03g00242 . Bpe04g00201 Bma04g00192 . . . . Cma09g00181 . . . Cpe06g00130 . . . . . . . . . . . . . . . Cone4ag1878 Cone7ag1787 . . Lsi04g01631 Csa03g04172 Chy04g00545 . . . . . . Bpe05g00345 . . . . Cmo09g00177 . . . Car09g00161 . . . . . . . . . Cla05g01971 . . . . . . . . . Cme04g00634
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006501 2 5 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83589 PF00069 Pkinase 3.70E-23 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01631 Lsi_Chr04 FPKM 14.861211 16.176975 19.132341 19.15646 17.688848 15.194384 16.203789 23.265495 20.567032 21.13464