Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01634 ATGGCTACTTCTATATCCTCTCTTGCATTCTCTCTATCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGAAGCCAAATGCCCTCTCCTTTCCCCGCTCAAAATCTCTTCTAATTTCCCCTTCGTGCTCTAATTCCCCACTTGTGGTATCTGCCTCCGCTGCTGCCGGAGTGGAGACGGCGGACCTTAGGAGCTTCGTGAAATCGAGCCTCCCTGGTGGTTTCGCTGCGCAAACGCTGTTTGGCACTGGTCGCCGGAAATCTGCAGTAGCTCGTGTTGTCCTTCGAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGATGTATTCGTGAAAGCCGAAGGAGGTGGGCTCTCTGGTCAGGCTCAGGCAATTTCCCTTGGCATTGCTCGTGCTTTGCTAAAGGTGAGTGATGATCACAGATCACCTCTAAAGAAAGAGGGGCTTTTGACAAGAGACTCTAGAGTCGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCACAAAATGGGACCAAACTGAACCGTAAACGCCCAGCACTTGAAAATATTGAAATGATTTTCCGTCCTTATCTCCTCCCCAATTTGTCGCTGCCGTCACTGGGCACCGGTAGCCCGCAGCGATCCGTTTTCAGTTACTACAAATTTTGCCGTCTAGAATCTCTATCACTGGCATCTTACATGTCGAACAATAGCAACAGTGTATCCATCCCAGTTTCTGACAATGAGTTGGACGAGTTGGAAAGGATGCGTGTTCGAGTTCGGAGGAAGCGAAAAAAACAAGGGAATCGAGTCAAGAATGAGTTGGCTCCTCGAGTTTTTAGAATGATGTTGAAGTATTGGTTGGTTGTTTTCTTCCTTCTTGCTGCGGGATTGCTTTTGTTTGAGGCAACAAAAATTGGTCAGAAATCGAGGCTGGAGGCGAAATCGGAGCGTGGTGGCATGACGAGCCCAAAGTTAGACGATTCGAAACTCGGAAATGTGAAGGAGTCGGGGTTGGACAATAAACCAGATGGGAATTTGAATAGACTCGATCCGGTTACTAGGATGGTTGCCGGAGTAAGAGAACGTTGCTTGAAACTCCTGCCACCAAAAGAACTTGAGCAATTGGATATTCCTGTGCGTGAAGGTTCGCCAGTTCCAGAGATTGATGTGAACTACATAACGGATAGTGACAGTTCCTTGTTTGTAGATAAATCTTCCTTGTCACGACAGAGCATGAATGCAACAAGATTTAATCTATTTACTGGATACCAGACTCTCGACCAGAGAGAAAAAAGTTTTAAGGTAAATGGAACTGTTGAGGTACATTGCGGTTTTTACAGTGATGATGGGGGTTTCAGAATTTCTAATGAAGACAGAACTTTCATGCAAACATGCACTCTTGTGGTGTCCACATGCGCATTTGGTGGTGGAGATGATCTTTATCAACCTATTGGAATGTCAGAGGCATCACTTCGCAAGGTTTGCTATGTTGCGTTTTGGGATGAAATCACTTTAAGTGCACAGGAATCAGTGGGACATGTTATTGGTGATGATGGATTTATTGGGAAATGGCGTGTTGTGGTTGTGAAGGATCTTCCTTTCGCTGATCAAAGATTGAATGGCAAAATCCCGAAGATGTTGGGACATCGTCTCTTCCCTAATGTGAAGTACTCCATTTGGGTAGATTCAAAGTCTCAATTCCGGAGAGATCCACTAGGAGTGTTTGAAGCTCTTCTTTGGCGTTCAAATTCTGAACTCGCAATATCACAACATGGAGCTCGGAGTAGCGTCTATGATGAGGCTGGAGCTGTGGTCAAGAAACATAAAGCCACCCCAGAAGAAGTCGACGTGCAGATAAAACGATATCGCTATGATCACTTCCCAGATGATAAGAGATTTAATGGGCATAAAGCTCTTGCAGAAGCCTCTGTTATTGTTAGGGAGCACTCTCCCGTGGTGAATTTGTTCATGTGCCTTTGGTTTAATGAGGTGGTGCGGTTTACTTCCAGGGATCAACTTAGCTTCCCATATGTTCTATGGCGCCTGAAAGTTGTTAAGAAAATTAATATGTTCCCCGTTTGCATTCGCAAAGATCTTGTCAATAGTATGGGCCACATTCGCAAGGCTAAGCCTCTGAATGTAAGCCGATTATCTTGA 2223 44.98 MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLLISPSCSNSPLVVSASAAAGVETADLRSFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKAQNGTKLNRKRPALENIEMIFRPYLLPNLSLPSLGTGSPQRSVFSYYKFCRLESLSLASYMSNNSNSVSIPVSDNELDELERMRVRVRRKRKKQGNRVKNELAPRVFRMMLKYWLVVFFLLAAGLLLFEATKIGQKSRLEAKSERGGMTSPKLDDSKLGNVKESGLDNKPDGNLNRLDPVTRMVAGVRERCLKLLPPKELEQLDIPVREGSPVPEIDVNYITDSDSSLFVDKSSLSRQSMNATRFNLFTGYQTLDQREKSFKVNGTVEVHCGFYSDDGGFRISNEDRTFMQTCTLVVSTCAFGGGDDLYQPIGMSEASLRKVCYVAFWDEITLSAQESVGHVIGDDGFIGKWRVVVVKDLPFADQRLNGKIPKMLGHRLFPNVKYSIWVDSKSQFRRDPLGVFEALLWRSNSELAISQHGARSSVYDEAGAVVKKHKATPEEVDVQIKRYRYDHFPDDKRFNGHKALAEASVIVREHSPVVNLFMCLWFNEVVRFTSRDQLSFPYVLWRLKVVKKINMFPVCIRKDLVNSMGHIRKAKPLNVSRLS 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23826626 23833884 - Lsi04G016340.1 Lsi04g01634 661683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01634 740 Pfam Protein of unknown function (DUF616) 433 727 IPR006852 -
Lsi04g01634 740 MobiDBLite consensus disorder prediction 333 358 - -
Lsi04g01634 740 Coils Coil 271 291 - -
Lsi04g01634 740 PANTHER OS01G0749100 PROTEIN 257 735 - -
Lsi04g01634 740 Hamap 30S ribosomal protein S9 [rpsI]. 74 204 IPR023035 -
Lsi04g01634 740 Pfam Ribosomal protein S9/S16 83 199 IPR000754 GO:0003735|GO:0005840|GO:0006412
Lsi04g01634 740 Gene3D - 70 205 IPR014721 -
Lsi04g01634 740 PANTHER ALKALINE CERAMIDASE-RELATED 257 735 IPR006852 -
Lsi04g01634 740 SUPERFAMILY Ribosomal protein S5 domain 2-like 79 199 IPR020568 -
Lsi04g01634 740 ProSitePatterns Ribosomal protein S9 signature. 143 161 IPR020574 GO:0003735|GO:0005840|GO:0006412
Lsi04g01634 740 MobiDBLite consensus disorder prediction 333 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01634 - - - bhj:120083005 878.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01634 Lsi-Chr4:23826626 Lsi08g00093 Lsi-Chr8:1896262 2.13E-62 dispersed
Lsi04g01634 Lsi-Chr4:23826626 Lsi04g01334 Lsi-Chr4:21111087 5.17E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g872 Blo01g01549 . Bda01g00550 . Bpe02g00408 . . Bma01g02299 . . Cma01g01885 . Car01g01469 . . . . . . . . . . . . . . . . . . . Cone7ag1794 . . Lsi04g01634 Csa03g04178 Chy04g00540 . . . . . . . . . . Cmo01g01948 . . . . . . Cpe02g00146 . . . . . . . Cla05g01967 Cam05g2118 Cec05g2129 Cco05g2181 Clacu05g2106 Cmu05g1982 Cre05g2101 . . . Cme04g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012789 1 5 1 1 0 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 0 0 3 2 1 1 3 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01634 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.10983 0.0