Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01639 ATGGCGCTCCGGAGATTAATTTCCAAGCGCTTTCTTCATGCGTACACAACTAATCCTTCTTCTTCCCCTCTCAATTTCATCTTCCGCCGCCACTATCTTTCTCCTCCGGCGGATTCCGCTGGGAAGTCTGTTTTCCGACGCTTTCTTCAGAGGAGAGCGATCTATCATTCGCCTTCCACGTCTCGGGTTCCCGAGTTGTTGTCCATGCCTGTTGGCGATAAACTTCGAGAGAAGCTCGGAGGTAGCAACATTACTGGAGATCGAATTCGCCTCGACGGCCTCATTCCTCCTGCGTCTTTTGAAAATGAACGTTGTGTTTCTGGATGTGGAATCTCAATAGATGATGCTAGAAAGATCATAAGGCTGTCGCAGGTCGAGAAGCTTAAGACGAAACTTAGAGATATTCCGAAGAGTTCGATCTCTTACTCGGAGTTTACTCGGATCTGTGTTGAAGATCGTGGGAATAACAAGGAACAGGGTGCTGAATTCGCTAAGTTGTTGGATGAATCTGGAAGCGTCATCGTGCTTGGGAATATTGTGTTCCTCCGCCCCGATCAGGTATAA 564 47.87 MALRRLISKRFLHAYTTNPSSSPLNFIFRRHYLSPPADSAGKSVFRRFLQRRAIYHSPSTSRVPELLSMPVGDKLREKLGGSNITGDRIRLDGLIPPASFENERCVSGCGISIDDARKIIRLSQVEKLKTKLRDIPKSSISYSEFTRICVEDRGNNKEQGAEFAKLLDESGSVIVLGNIVFLRPDQV 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23855763 23856326 - Lsi04G016390.1 Lsi04g01639 661688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01639 187 PANTHER CALCIUM UNIPORTER PROTEIN 4, MITOCHONDRIAL 1 187 - -
Lsi04g01639 187 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 1 187 IPR039055 GO:0051560
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01639 K20858 MCU; calcium uniporter protein, mitochondrial - csv:101211280 284.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01639 Lsi-Chr4:23855763 Lsi10g00642 Lsi-Chr10:8941022 3.13E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g891 . Blo12g00913 . . . . Bma04g00199 . . . Cma01g01888 Cma09g00174 Car01g01472 . . Cpe06g00124 . . . . . . . . . . . . . . . . Cone7ag1802 Cone17ag1321 Cone20ag0155 Lsi04g01639 Csa03g04182 Chy04g00535 . Blo17g00814 . Bda08g01299 . . . . . . Cmo01g01951 Cmo09g00171 . . . Car09g00156 . Cpe02g00144 . . . . . . . Cla05g01963 Cam05g2113 Cec05g2124 Cco05g2177 Clacu05g2102 Cmu05g1978 Cre05g2097 . . . Cme04g00615
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007938 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01639 Lsi_Chr04 FPKM 106.492905 111.698074 139.60347 134.46727 81.107857 88.812424 82.868591 173.556671 179.465698 173.303909