Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01642 ATGGAGAATATGTCGCAGAGAGAGAGCATTCTTTTAGGTTATTCGCTTCAGAGATCATTCACTAACCCTTCTTCATCGCCGAGAGCTTCCAATCGGAACTCCGATGATGTTGATTTTCACGACGTGTTTGGTGGTCCTCCGAGGAGGCGGTCATCGGTTCATGAAACGCGGTATAGCTTCTCTGAGACGGGGGATTCCTTCTCATTGAAAGGCGGCGATGATGAAGCGTTACCCGGCCGGAGTGGCCCCTGGTCCGGTTTGAATGAGAAACCGGTGTTTGGAGAAGAAGGTGTACACGGGCGGCGATTTCCGAGCGATGATTTTTACGATGATATCTTTAAAGGCGATGAATCGGTGAATTCTTCTCCTCGCCGGCATGAGCGTGACATTTTCTCTTCGATTCCTGGTTCGAAGGTTCTAAGTCCTGCTAGACCTCTTCCGCCGCCGGCGGAACCCTTCGGAAGTTCTTCCCTCCCTGCACAATTAAGCCTACCATCAAGATTAGCCAAAGGGACTGATTTACCGGCGTTTGGATCGAGCTCGTTAAGAAACAAGGACAGTGTTTCGAATGGAAGTCATACAAATTCTTCTAGGTTAACTCTTTCTAGATTTTCTTCTAGCACATCAAGCCACCGTTTCGAGGATCTTAAAACTGATTACAATTTGCCTGATCGTACCGGTCTCTTGTCATCTGAATTCCAAGAACATGGCAATGAGGAAGCATCGTCCTTCAGAAAGTCTGATAATGCATTGAGTGTGAGCAGCTTAACGAAGGGAGTAGAAGATAGTTTAGAAGAATCAAATGGTGGTGGTCAATTTCAGTTCCATTTCTCAATTTACAAATGGGCAAGCAAAGGGGTGCCTCTGATGATGCCATTGAGAGGAGGGAACGGATCGAGATTAAGAGAAAAGACTTTGCTTAGAAGAAGCTCGAGCTCGACCGATAGGGTAATGAAGGCGAAAAATGAAATCCATTCCCCAACATCGACTACACAGAATATTGATTTTCCTCCTATTTTTCATGAGAGGATGAACGTCGATGATGAAAAAGGAACTGATTTACTGCCTGACATAGAGACTGTTGATCAAAGACAAAGTTCATCTGCACTTTCAGAAAACTTGAGCAGACAAAGTTCTCGTAAGGATGTTGACAGTGATAACATCGGTCGCCCAAGGGAAAAAGAGAAACCTCATTCTTTTCCCAAGAAAGTTTCAAGTGAAAAATCAGAGAAAAACGTGGCTTCGACAACGAACGAAGATCAAAAGCATGAAGCTAAATCTCTAAGTTCCTTTCTTCTCTACAGTGATAGTGAACAAAGTGAAGAAGGGATAGGTAAAGAATATCGTAAAGGGGAAATCATGGCAAAAAGTGACAAGAAATCATCAATTCTTTCTGATCTAAGTAGTAGCCCAAAGAAACAGGACAAACAAACTCTAAAAGTGAAAAAACCTAGTCCCCTAAGTTCAGACATAGAATCTGGGCATAACATTGGCAGAAAGAAAGTTGGTGGAAAAATTTCAGAGTTTGTTAAGCTTTTCAACCAAGAACCTACATCGAAACCCCGAGATGTAGTCGATTCAGAAAATGATAGCTCTACAATGAAACAGGAAAGTACTTCAAAAGCTCAAACAGAAGCAACCGTCAATAAAATAAGGAAGGATGAGAAACCCAAGTTGAATAGGAATACAGATTCTTCCATCAATGGAGATGATGTTTCCAAGCATTCAATGGATGATCACTCTGCTAAAAGTGCTGCTAGCTACAGAAGTAGCTTTGCTTCTTCCAAAGAGGGTAGTCCAGCTCCAAACACTGTTCACGTTCCCGATGTCGCAAAGTCTACAGTTCCAGATGTGGAGGATCCCTTCCAGGAGAATTTTTCGGTAAAAGAGTTACCAGAAGACTATGACAAATCCACAGAAACAAACAATGGCCGTGAAGAACTACAAGCTATCGATACTAAAATACGACAATGGTCAAACGGGAAGGAAGGGAATATACGTTCGCTGCTATCAACTTTGCAATATGTTCTTTGGCCCAAGAGCGGATGGAAACCCGTTCCTCTCGTTGATATAATCGAAGGAAATGCAGTCAAAAGATCTTATCAGAAAGCTTTGTTATACCTACATCCTGATAAGCTACAACAGAAGGGTGCTTCATCAGATCAAAAATATATTGCAGCAAAAGTTTTTGAAATATTACAGGAGGCTTGGACTCATTTCAACACGCTTGGTGGATTATGA 2241 42.48 MENMSQRESILLGYSLQRSFTNPSSSPRASNRNSDDVDFHDVFGGPPRRRSSVHETRYSFSETGDSFSLKGGDDEALPGRSGPWSGLNEKPVFGEEGVHGRRFPSDDFYDDIFKGDESVNSSPRRHERDIFSSIPGSKVLSPARPLPPPAEPFGSSSLPAQLSLPSRLAKGTDLPAFGSSSLRNKDSVSNGSHTNSSRLTLSRFSSSTSSHRFEDLKTDYNLPDRTGLLSSEFQEHGNEEASSFRKSDNALSVSSLTKGVEDSLEESNGGGQFQFHFSIYKWASKGVPLMMPLRGGNGSRLREKTLLRRSSSSTDRVMKAKNEIHSPTSTTQNIDFPPIFHERMNVDDEKGTDLLPDIETVDQRQSSSALSENLSRQSSRKDVDSDNIGRPREKEKPHSFPKKVSSEKSEKNVASTTNEDQKHEAKSLSSFLLYSDSEQSEEGIGKEYRKGEIMAKSDKKSSILSDLSSSPKKQDKQTLKVKKPSPLSSDIESGHNIGRKKVGGKISEFVKLFNQEPTSKPRDVVDSENDSSTMKQESTSKAQTEATVNKIRKDEKPKLNRNTDSSINGDDVSKHSMDDHSAKSAASYRSSFASSKEGSPAPNTVHVPDVAKSTVPDVEDPFQENFSVKELPEDYDKSTETNNGREELQAIDTKIRQWSNGKEGNIRSLLSTLQYVLWPKSGWKPVPLVDIIEGNAVKRSYQKALLYLHPDKLQQKGASSDQKYIAAKVFEILQEAWTHFNTLGGL 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23897160 23901273 - Lsi04G016420.1 Lsi04g01642 661691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01642 746 MobiDBLite consensus disorder prediction 547 561 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 583 601 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 177 204 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 361 645 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 531 546 - -
Lsi04g01642 746 PANTHER J DOMAIN-CONTAINING PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 1 740 - -
Lsi04g01642 746 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 740 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 33 56 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 94 132 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 15 204 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 623 645 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 361 376 - -
Lsi04g01642 746 Gene3D DnaJ domain 642 745 IPR036869 -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 377 426 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 15 32 - -
Lsi04g01642 746 MobiDBLite consensus disorder prediction 440 459 - -
Lsi04g01642 746 SUPERFAMILY Chaperone J-domain 637 740 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01642 - - - bhj:120091511 1194.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01642 Lsi-Chr4:23897160 Lsi04g01688 Lsi-Chr4:24273182 4.40E-31 dispersed
Lsi04g01642 Lsi-Chr4:23897160 Lsi02g00919 Lsi-Chr2:8829069 2.75E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01642 Lsi_Chr04 FPKM 2.756536 3.538509 3.461426 5.869389 53.362228 41.82074 46.65123 7.197534 9.08115 7.84994