Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01644 ATGCCATCTTATATGTCAAAACTACGAGCACCAGTTAAATTTCTAGGGTGGGAAGGTGGATTGAAAAGTTCATTGGAGCTGCTTTTGGGGCATCAGAAACTGTTGTGTAGCAATTCTAGTCTATTTCACTCGGTTCCTTATTCCTCGCTTACAGAATTGCATGCTCTCTTAAGACCTGGCACTATTTCCGGTGCTAGTTCAGAGCTAGTTAATCGCCGGAGGAATATCTCGGTTCTTGGGGCAATTTCTCGCACATTTTCTATTCCCTCAGTGTCAGGCCCCACATTTCAGACTTGTGGGTATCACATTGATTGTGCCATTGCTGAATCCTATCAATATTCAACTCACAGCAAGTGTCAAGATAAACCAATGGCTGCTTGTTGTTCTAGAGCTACACTTGGTGAATGTTCTCTTGATAATTTAGGTTTTAGGAATGCTGTGCACGTGTCTCCTTCAGCAATTAGTGCTGGTATTTGTTTTAACAGTAGAAGCGTCGATAGCTGTCGGAAAGCCAGCATGAGTTTGAAAAATCAAGAGCAGCCTAGCAATAATGTGATATATGGATACTTCACTTACATTGTTGCAAAAAGGTTTTGCAGTAGTTACCTACATACTGTGTCAGGACTAAGAGATCTTCATAGTTCATCAACTTCTCAGTTTGCTGCCGGTTCTGCCCCCAATGTGTCATTTGATAATTCTGCACGGGAGGAACAACTTGCCAACTCTACTGATTCATCTGAACGGAAGATCTCGATGGGCAAATCATTAAAACTGGTTTCTGGATCATGCTATCTACCCCATCCTGATAAAGAAGATACTGGTGGAGAGGACGCTCACTTTATCTGTGTAGATGAACAAGCTGTAGGGGTGGCTGATGGTGTGGGTGGTTGGGCAGATCTTGGTGTTGATGCTGGACAGTATTCCCGAGAACTCATGTCTAATTCGGTTAGCGCAGTTCAAGAAGAGCCCAAGGGCTCAATTGATCCAGCTAGGGTCTTGGAGAAGGCTCACTCAAAAACAAAAGCCAAAGGTTCCTCCACTGCTTGTATCATAGCGCTTACAGAACAATGTAAGGCATCACTGCAGGGTCTCCATGCAATCAATTTAGGAGACAGTGGATTTATGGTGGTTAGAGACGGATGCACTGTCTTCAGATCTCCTGTGCAGCAGCATGATTTTAACTTCACATTTCAATTGGAGAGTGGAAACAATGGAGATTTGCCTAGCTCTGGACAGGTTTTCTCTGTCCCCGTTGCTCCTGGAGATGTCATAATTGCTGGCACCGATGGTCTCTTTGATAACTTATACAACAACGAGATCACCGCAGTGGTGGTTCATGCCATGAGAGCAGGTTTAGGCGCTCAGGTGACTGCCCAGAAGATAGCTGCCCTTGCACGCCAACGAGCTCAAGATAAAGACCGACAAACACCTTTCTCCACTGCTGCTCAAGATGCTGGGTTTCGCTATTATGGAGGCAAACTTGACGACATCACCGTCGTTGTGTCGTATGTCACAAGCTCTAACGATAAGTGA 1533 44.81 MPSYMSKLRAPVKFLGWEGGLKSSLELLLGHQKLLCSNSSLFHSVPYSSLTELHALLRPGTISGASSELVNRRRNISVLGAISRTFSIPSVSGPTFQTCGYHIDCAIAESYQYSTHSKCQDKPMAACCSRATLGECSLDNLGFRNAVHVSPSAISAGICFNSRSVDSCRKASMSLKNQEQPSNNVIYGYFTYIVAKRFCSSYLHTVSGLRDLHSSSTSQFAAGSAPNVSFDNSAREEQLANSTDSSERKISMGKSLKLVSGSCYLPHPDKEDTGGEDAHFICVDEQAVGVADGVGGWADLGVDAGQYSRELMSNSVSAVQEEPKGSIDPARVLEKAHSKTKAKGSSTACIIALTEQCKASLQGLHAINLGDSGFMVVRDGCTVFRSPVQQHDFNFTFQLESGNNGDLPSSGQVFSVPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGAQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVTSSNDK 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23907254 23911969 - Lsi04G016440.1 Lsi04g01644 661693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01644 510 MobiDBLite consensus disorder prediction 227 248 - -
Lsi04g01644 510 SUPERFAMILY PP2C-like 263 501 IPR036457 -
Lsi04g01644 510 SMART PP2C_4 249 502 IPR001932 -
Lsi04g01644 510 SMART PP2C_SIG_2 272 504 IPR001932 -
Lsi04g01644 510 ProSiteProfiles PPM-type phosphatase domain profile. 262 504 IPR001932 -
Lsi04g01644 510 PANTHER PROTEIN PHOSPHATASE 87 509 - -
Lsi04g01644 510 Pfam Stage II sporulation protein E (SpoIIE) 286 504 IPR001932 -
Lsi04g01644 510 Gene3D - 269 400 IPR036457 -
Lsi04g01644 510 Gene3D - 407 509 IPR036457 -
Lsi04g01644 510 PANTHER PROTEIN PHOSPHATASE 2C 87 509 IPR039123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01644 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - csv:101205693 897.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01243 Lsi-Chr2:16329283 Lsi04g01644 Lsi-Chr4:23907254 1.46E-37 dispersed
Lsi04g01644 Lsi-Chr4:23907254 Lsi07g00217 Lsi-Chr7:2315998 2.14E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g910 Blo01g01554 . . Bda03g00254 . . Bma04g00203 Bma01g02309 . . Cma01g01892 Cma09g00171 Car01g01476 . . . . . . . . . . . . . . . . . . . . Cone17ag1330 Cone20ag0148 Lsi04g01644 Csa03g04189 Chy04g00530 . . . . . . . . . . Cmo01g01955 . . . . Car09g00150 . Cpe02g00140 . . . . . . . . . . . . . . . . . Cme04g00610
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01644 Lsi_Chr04 FPKM 4.828443 3.902328 9.163742 11.59753 2.708823 5.252806 3.368343 28.247402 26.493097 25.713001