Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01645 ATGTATCTTCTTCTTGTTTTCCTTCTTTTTCTTCTTACAATCCTTCTGAAATTTCTCTACTCCACTTTCTGGCTTCCATGGAGAATTCAAATCCATTTCCGAAAACAGGGCATAACAGGCCCTCCCTACCGTCCGATCATCGGTAACTCCGCCGATATCCGCCGTCTGTTCGCGGAGGCACAATCGAAACCCATTCCATTTCACCATGATATACTCTCCCGCGCTCTCCCTTTTTACTTCCGGTGGTCCGGCGAGTACGGAAAGACGTTTCTATACTGGTTCGGGTCGAAACCGAGACTGGCCATATCTGACCCCGATCTAATTAAGGAAGTGCTTGTGAATACGCGTGGGTGTTTTCGAAGGATCCTGTTCAACCCGCTGTCGAAGGTGCTTTTCGGAGAGGGACTGACTGCACTAGAGGGAGAAAAATGGGTCGCTCGCCGGAGAATTGCAAATCAAGCTTTCAACATCGAGCGAGTAAAGGGATGGGTACCCGAAATTGTTGTTAGTGTGTCGAGTGTGTTGGAGAAATGGGAAGAGATGAAGGATGGAATGGAGGAGTTTGAATTGGACGTTCACAAAGAAGTTCGTCGCCTCTCAGCAGACGTTATTTCAAGAACTGCATTTGGAAGTAACTTTGAAGAAGGAAAGCGCATCTTCAGTTTGCTGGAACAGCAAACACATCTTTTCTCCCAAGCAGTCAGAAGCGTTTATATTCCTGGCTTCAGATTTTTGCCAACCAAGAAGAACAGAGAAAGGTGGAGCCTGGAGAAAGAAGCCCGTGAATTGATAAAAGTGCTGATTGATACAAACAGCAAAGGAAGGGAAAACTCAACTAATCTACTTAGCTTGTTAATGTCGTCTTACAAGAATCAGAATGGGGAAGAAGAAAAACTTGGCGTGGAGGAAATCGTTGATGAATGTAAGACATTCTATTTTGCAGGAATGGAAACAACTGCCCATCTTTTAACTTGGGCTCTTCTGCTACTAGCAAAGCATCAAGAATGGCAAGACAAGGCCCGAGAAGAAGTTCTCAAAGTCTGTGGGCACAAAACACCTCCTGCAGCAGAGAATTTGAGTGAACTTAAACTTGTAGGTATGATAATTAACGAAACACTTCGACTTTATCCTCCAGCGGTGATGTTGACGAGGCAGGCATCAAAACAGCTGACACTAGGAAGCTTAGACATTCCTGCTGGCACAGAGCTTTTCATGGCGTTGGCTGCTGTCCACCATGACAAAGAGTTTTGGGGAGAGGATGCAAACTGCTTCAACCCTTTGAGATTTGGTGAGCCTCGGAAACATTTAGCTTCGTTTCTGCCATTTTCGTTGGGTCCCAGAATTTGTGTAGGCCAAAACTTGGCGTTGATTGAGGCCAAAGTCACTTTGGCCATGATAATTCAACGATTCTCTTTGGCTGTTTCTCCAACCTATACTCATTCCCCTATGCTGTTTGTAACCTTACAGCCTCAGTTTGGTGCTCAGCTCGTTGTTAGTAGCTTATGGAATTGA 1512 45.24 MYLLLVFLLFLLTILLKFLYSTFWLPWRIQIHFRKQGITGPPYRPIIGNSADIRRLFAEAQSKPIPFHHDILSRALPFYFRWSGEYGKTFLYWFGSKPRLAISDPDLIKEVLVNTRGCFRRILFNPLSKVLFGEGLTALEGEKWVARRRIANQAFNIERVKGWVPEIVVSVSSVLEKWEEMKDGMEEFELDVHKEVRRLSADVISRTAFGSNFEEGKRIFSLLEQQTHLFSQAVRSVYIPGFRFLPTKKNRERWSLEKEARELIKVLIDTNSKGRENSTNLLSLLMSSYKNQNGEEEKLGVEEIVDECKTFYFAGMETTAHLLTWALLLLAKHQEWQDKAREEVLKVCGHKTPPAAENLSELKLVGMIINETLRLYPPAVMLTRQASKQLTLGSLDIPAGTELFMALAAVHHDKEFWGEDANCFNPLRFGEPRKHLASFLPFSLGPRICVGQNLALIEAKVTLAMIIQRFSLAVSPTYTHSPMLFVTLQPQFGAQLVVSSLWN 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23913684 23916752 - Lsi04G016450.1 Lsi04g01645 661694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01645 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Lsi04g01645 503 Gene3D Cytochrome P450 23 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS E-class P450 group I signature 199 217 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 4 496 - -
Lsi04g01645 503 Pfam Cytochrome P450 80 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01645 503 PANTHER CYTOCHROME P450 FAMILY MEMBER 4 496 - -
Lsi04g01645 503 SUPERFAMILY Cytochrome P450 34 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01645 Lsi-Chr4:23913684 Lsi04g01647 Lsi-Chr4:23946285 0 dispersed
Lsi05g00383 Lsi-Chr5:4853695 Lsi04g01645 Lsi-Chr4:23913684 2.84E-110 dispersed
Lsi04g01645 Lsi-Chr4:23913684 Lsi04g01646 Lsi-Chr4:23929052 3.33E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01645 - - csv:101205457 897.501