Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01646 GGGATAACAGGGCCTTCCTACCGTCCGATCATTGGTAACGCCACCGATATCCGCCGTCTGTACAAGGAGGCCAATGCGAAGCCAATTCCGTTAACCCACGATATAGTGTGTCGGGTACTACCTTATATTAACCGATGGTCCGAGGAGTACGGGAAGATGTTTGTGTATTGGTTCGGGTCGAAACCGAGACTGGCAATATCCGACCCGGAAATGATTAAGGAAGTGCTTACAAATACGGGTGGGCCTTTTAGAAAGGTCGGGTTCACTCCGGTTTCCAAGTTGCTGTTTGGAGAAGGACTAGTCGGACTCGAGGGCGACCAATGGGTCGTCCACCGGAGAATTGCAAATCAGGCTTTCACTATCGACCGTGTGAAGGGGTGGTTACCAGAGATTGCGTTGAGTGTTAGTAATGTGTTGGAGAAATGGGAAGAAATGAAGGGAGAAAAGGAGGAGTTTGAATTAGATGTCCATAAACAACTTCGTCTCCTCACAGCAGACGTAATTTCAAGAACTGCTTTTGGAAGTAATTTTGAAGAAGGCAAACGCATTTTCAATTTGCAAGAACAACAAATGCATCATTTTCTCCAGGCCATCTCAAGTGTTTATATTCCTGGCTATAGATTCTTACCTACCAAGGGAAATAGAAAAAGGCAGAGGCTGGAAAAAGAAACTCGTGCTTCAATAAAAGCACTAGTTGAAAAAACCCAAAATCCAATCACAGACCTTCCACTATTATTGTTGTTTCTGAATCTTTTTCTCACAATCCTCTTCAAATTTTTCTACTCCAATATCTGGGTTCCATGGAGAATTCAAATCCACTTCCAAAAACAGGGGATAACAGGGCCTTCCTACCGTCCGATCATCGGTAACGCCACCGATATCCGTCGTCTGTGCAAGGAGGCCAATGCGAAGCCAATTCCATTAACCCACGATATAGTGTGTCGGGTGCTGCCTTATATTCACCGGTGGTCCGAGGAGTATGGGAAGATGTTTGTGTATTGGTTCGGGTCGAAACCGAGACTGGCGATATCCGACCCGGAAGTGATTAAGGAAGTGCTTACGAATACGGGTGGGCCTTTTAGAAAGGTCGGGTTTACCCCGGTTTCCAAGTTGCTGTTTGGAGAAGGACTGGTCGGACTCGAGGGCGAACAATGGGTCGTCCACCGGAGAATTGGAAATCAGGCTTTCACTATCGACCGTGTGAAGGGGTGGTTACCAAAGATTGCGGTAAGTGTTCGTAATGTATTGGAGAAATGGGAAGAAATGAAGGGAGGAAAGGAAGAGTTTGAATTAGATGTCCATAAACAACTTCGTCTCCTCACAGCAGACGTAATTTCAAGAACTGCTTTTGGAAGTAATTTTAAAGGAGGCAAACGCATTTTCAATTTGCAAGAACAACAAATGCATCATTTTCTCCAAGCCGTCTCACGTGTTTATATTCCTGGCTACAGATTTTTACCTATCAAGAGGAATAGAGAAAGACAGAGACTGGAAAAAGAAACCCTGAAAAAAAACAGCAAAGAAAGGGAAAATTCAACTAATCTACTTAGCCTCTTATTGTCATCATACAAGAACCAGAATGGAGAAATAAAAAAACTTGGAGTGGAGGAAGTCGTAAATGAATGCAAGACATTCTATTTTGCAGGCATGGAAACAACGACCAATCTTTTAACTTGGGCCCTTTTACTACTAGCAGAGCATCAAGAATGGCAAGATCGAGCTCGAGAAGAAGTCATCAAAATATGCAGCCACAAGACACCGCCTATGGTCGATAATTTAACCGAACTTAAACTAGTGGGTATGATAATCAATGAAACACTTCGACTTTATCCTCCGGCGGTGATGATGATGCGGCGGACAACGAAACGATTGACTCTAGGAAACGTCGACGTGCCGGAAGGCACACAACTTCAACTTTTAGTGGCTGCAATCCACCATGACACAGAGCTTTGGGGAAAAGATTCGAGTAGCTTCAACCCTATGAGGTTTAGTGAGCATAGAAAGCATTTGGCTTCATTTTTGCCATTTGGGTTGGGTCCAAGAATCTGTGTAGGCCAACATTTGGCTTTGATTGAGGCCAAAGTTGCATTGGCTATGATAATTCAACGATTCTCTTTTACGGTTTCTCCAACCTACACTCATGCTCCTATGATGTTTGTAAGCTTAAACCCTCAGTTTGGTGTTCAGCTCCTCGTTAAGAGCTTATGGAATTGA 2214 43.99 GITGPSYRPIIGNATDIRRLYKEANAKPIPLTHDIVCRVLPYINRWSEEYGKMFVYWFGSKPRLAISDPEMIKEVLTNTGGPFRKVGFTPVSKLLFGEGLVGLEGDQWVVHRRIANQAFTIDRVKGWLPEIALSVSNVLEKWEEMKGEKEEFELDVHKQLRLLTADVISRTAFGSNFEEGKRIFNLQEQQMHHFLQAISSVYIPGYRFLPTKGNRKRQRLEKETRASIKALVEKTQNPITDLPLLLLFLNLFLTILFKFFYSNIWVPWRIQIHFQKQGITGPSYRPIIGNATDIRRLCKEANAKPIPLTHDIVCRVLPYIHRWSEEYGKMFVYWFGSKPRLAISDPEVIKEVLTNTGGPFRKVGFTPVSKLLFGEGLVGLEGEQWVVHRRIGNQAFTIDRVKGWLPKIAVSVRNVLEKWEEMKGGKEEFELDVHKQLRLLTADVISRTAFGSNFKGGKRIFNLQEQQMHHFLQAVSRVYIPGYRFLPIKRNRERQRLEKETLKKNSKERENSTNLLSLLLSSYKNQNGEIKKLGVEEVVNECKTFYFAGMETTTNLLTWALLLLAEHQEWQDRAREEVIKICSHKTPPMVDNLTELKLVGMIINETLRLYPPAVMMMRRTTKRLTLGNVDVPEGTQLQLLVAAIHHDTELWGKDSSSFNPMRFSEHRKHLASFLPFGLGPRICVGQHLALIEAKVALAMIIQRFSFTVSPTYTHAPMMFVSLNPQFGVQLLVKSLWN 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23929052 23941378 - Lsi04G016460.1 Lsi04g01646 661695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01646 737 Pfam Cytochrome P450 320 716 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 Pfam Cytochrome P450 43 239 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 SUPERFAMILY Cytochrome P450 277 733 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 676 685 IPR017972 GO:0005506|GO:0016705
Lsi04g01646 737 Gene3D Cytochrome P450 265 734 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS E-class P450 group I signature 348 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS E-class P450 group I signature 324 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS E-class P450 group I signature 673 683 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS E-class P450 group I signature 557 583 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS E-class P450 group I signature 537 554 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS E-class P450 group I signature 683 706 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS E-class P450 group I signature 440 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 Coils Coil 490 510 - -
Lsi04g01646 737 PRINTS P450 superfamily signature 601 612 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS P450 superfamily signature 674 683 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS P450 superfamily signature 548 565 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PRINTS P450 superfamily signature 683 694 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 238 - -
Lsi04g01646 737 Gene3D Cytochrome P450 1 246 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 245 730 - -
Lsi04g01646 737 SUPERFAMILY Cytochrome P450 3 237 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01646 737 PANTHER CYTOCHROME P450 FAMILY MEMBER 245 730 - -
Lsi04g01646 737 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 1 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01646 Lsi-Chr4:23929052 Lsi11g00296 Lsi-Chr11:3063954 3.43E-53 dispersed
Lsi04g01645 Lsi-Chr4:23913684 Lsi04g01646 Lsi-Chr4:23929052 3.33E-114 tandem
Lsi04g01646 Lsi-Chr4:23929052 Lsi04g01647 Lsi-Chr4:23946285 5.40E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01646 - - csv:101210785 836.254