Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01647 ATGTATATTATTGTGCCTTTCGTTCTTCTTTTTGTCTCAATCCTCTTCAAATTTCTCTACGCCAATTTATGGGTTCCATGGAGAATTCAAATCCACTTCCAAAAACAGGGGATAACAGGGCCTTCCTACCGTCCGATTATCGGTAACGCCACCGATATCCGCCGTCTGTACAAGGAGGCCAATGCGAAGCCAATTCCGTTAACCCACGATATAGTGTGTCGGGTGCTGCCTTATATTCACCGGTGGTCCGAGGAGTACGGAAAGATGTTTGTGTATTGGTTCGGGTCGAAACCGAGATTGGCGATATCCGACCCGGAAATGATTAAGGAAGTGCTTACGAATACGGGTGGGCCTTTTAGAAAGGTCGGGTTCACTCCGGTTTCCAAGTTGCTGTTTGGAGAAGGACTTGTCGGACTCGAGGGTGAACAATGGGTCCTCCATCGGAAAATCGCTAATCAGGCTTTCACCATCGACCGTGTGAAGGGTTGGTTACCAGAGATTACATTGAGTGTTCGTAATGTTTTGGAGAAATGGGAAGAGATGAAGGGAGGACAGGAAGAGTTTGAATTAGATGTCCATAAACAACTTCGCCTCCTCACAGCTGACGTAATTTCAAGAACTGCTTTTGGAAGTAATTTTGAAGAAGGCAAACGTATTTTCAATTTGCAAGAACAACAAATGCATCATTTTCTCCAGGCCGTCTCAAGTGTTTATATTCCAGGCTATAGATTTTTACCTACCAAGGGGAACAGAGAGAGGCAGAGACTGGAAAAAGAAACTCGTGCTTCAATAAAAGCACTAGTTGAAAGCATGGAAACAACTGCTAATCTTTTAACTTGGGCCCTTTTACTACTAGCAGAGCATCAAGAATGGCAAGACCGAGCTCGAAAAGAAGTCATCAAAGTCTGCGGCCACAAGACACCGCCTGTGGCCGATAATTTAACCGAACTTAAACTAGTGGGTATGATAGTCAACGAAACACTTCGACTTTATCCTCCAGCAGTGATGATGATGCGGCGGACAACAAAACGGTTGACGTTAGGAAACGTCGATGTGCCGGAAGGCACACAACTTCAACTCTCAGTGGCTGCAGTTCACCATGACACAGATCTTTGGGGAGAAGATGCGAGCAGTTTCAACCCTATGAGATTTAGTGAGCCTAGAAAGCATTTGGCTTCATTTTTGCCATTTGGGTTGGGTCCAAGAATCTGTGTAGGCCAACATTTGGCTTTGATTGAGGCCAAAGTTGCATTGGCTATGATAATTCAACGATTCTCTTTTACGGTTTCTCCAACCTACACGCATGCCCCCATGATGTTTGTAAGCTTAAATCCTCAATTCGGTGTTCAGCTCCTCGTTAGGAGCTTATGGAATTGA 1377 44.88 MYIIVPFVLLFVSILFKFLYANLWVPWRIQIHFQKQGITGPSYRPIIGNATDIRRLYKEANAKPIPLTHDIVCRVLPYIHRWSEEYGKMFVYWFGSKPRLAISDPEMIKEVLTNTGGPFRKVGFTPVSKLLFGEGLVGLEGEQWVLHRKIANQAFTIDRVKGWLPEITLSVRNVLEKWEEMKGGQEEFELDVHKQLRLLTADVISRTAFGSNFEEGKRIFNLQEQQMHHFLQAVSSVYIPGYRFLPTKGNRERQRLEKETRASIKALVESMETTANLLTWALLLLAEHQEWQDRARKEVIKVCGHKTPPVADNLTELKLVGMIVNETLRLYPPAVMMMRRTTKRLTLGNVDVPEGTQLQLSVAAVHHDTDLWGEDASSFNPMRFSEPRKHLASFLPFGLGPRICVGQHLALIEAKVALAMIIQRFSFTVSPTYTHAPMMFVSLNPQFGVQLLVRSLWN 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23946285 23948961 - Lsi04G016470.1 Lsi04g01647 661696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01647 458 PRINTS P450 superfamily signature 395 404 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PRINTS P450 superfamily signature 322 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PRINTS P450 superfamily signature 404 415 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PRINTS P450 superfamily signature 269 286 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 SUPERFAMILY Cytochrome P450 36 454 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PANTHER CYTOCHROME P450 FAMILY MEMBER 8 270 - -
Lsi04g01647 458 PANTHER CYTOCHROME P450 FAMILY MEMBER 271 451 - -
Lsi04g01647 458 Pfam Cytochrome P450 264 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 Pfam Cytochrome P450 79 269 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 397 406 IPR017972 GO:0005506|GO:0016705
Lsi04g01647 458 PRINTS E-class P450 group I signature 107 128 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PRINTS E-class P450 group I signature 394 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PRINTS E-class P450 group I signature 404 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PRINTS E-class P450 group I signature 199 217 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 Gene3D Cytochrome P450 268 450 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 Gene3D Cytochrome P450 28 267 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01647 458 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 8 270 - -
Lsi04g01647 458 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 271 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01645 Lsi-Chr4:23913684 Lsi04g01647 Lsi-Chr4:23946285 0 dispersed
Lsi04g01647 Lsi-Chr4:23946285 Lsi06g00938 Lsi-Chr6:19296181 1.93E-128 dispersed
Lsi04g01646 Lsi-Chr4:23929052 Lsi04g01647 Lsi-Chr4:23946285 5.40E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01647 - - csv:101210785 808.52