Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01649 ATGGAGAGCGCCTTCGCGAGCGCCTCTGCTATATCAGACCAGAGGCAGAAGATCGAACAGTATAAGCACATTCTGTATAATGTTTTGTCGTCAAATGATAGGGTTCAAGCCAAGAAGTTTATCGATCACACACTATCTGACGAAGTTCCACTTGTAGTTTCGCGGCAGCTCTTGCAAACTCTAGCGCAAGAGTTGGGGAAGTTGGAGGGGGAGACTCAGAAAGAAATTGCCCATTACATCCTCGCTCAAATTCAGCCGCGCGTCGTCTCTTTCGAGGAGCAGGTGTTGATTATTCGTGAGAAGCTTGCTGAATTGTATGAATCAGAGCAGCAATGGTCAAAAGCTGCTCAGATGCTCAGTGGCATAGATCTAGACTCCGGAATGAGGTACAACTCCCTTTTTCCTTTCAAGTTCTTTTTGGTGATCGACGAGTCCTACCGGTTGTCAAAATGTGTTCAAATTGCTCGTTTATACCTTGAGGATGATGATGCTGTTAATGCCGAGGCTTTTATCAATAAAGCTTCATTCTTGGTTAGCAATAGTCAGCACGAAGTCCTTAATTTACAATACAAGGTTTGCTATGCTAGGATCTTAGATTTGAAAAGGAAGTTCTTGGAAGCAGCACTACGATATTATGATATATCTCAAATTGAAAAGAGACAAATAGGAGACGAGTATGTAAACTTGAACATTCTTTTCATGGAATATAAGTGGTTAGAGATTGACGAAGAAGCATTGGAACAAGCTTTATCTGCTGCAGTGACTTGTACAATATTGGCTGCTGCTGGCCCACAGCGATCCCGAGTTCTTGCCACATTGTACAAAGATGAGCGTTGCTCGAAGTTAAAAATCTATCCAATACTGCAAAAGGTTTACTTGGAGAGAATTTTGAGAAAACCAGAAATTGATGCATTTGCTGAAGAGCTAAAGCCTCACCAGCAAGCCCTTCTGCCAGATAATTTTACTGTGTTGGATCGTGCTATGATTGAGCATAATCTTCTCAGTGCAAGCAAACTTTACACAAATATAAGCTTTGAAGAATTAGGCACTTTGCTGGGTATTCCTCCTCATAAGGCTGAGAAGATAGCATCAAGAATGATTTACGAGGACAGAATGAGGGGATCAATTGACCAGGTT 1137 41.95 MESAFASASAISDQRQKIEQYKHILYNVLSSNDRVQAKKFIDHTLSDEVPLVVSRQLLQTLAQELGKLEGETQKEIAHYILAQIQPRVVSFEEQVLIIREKLAELYESEQQWSKAAQMLSGIDLDSGMRYNSLFPFKFFLVIDESYRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIEKRQIGDEYVNLNILFMEYKWLEIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQQALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQV 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23970988 23976925 + Lsi04G016490.1 Lsi04g01649 661698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01649 379 Pfam PCI domain 293 379 IPR000717 -
Lsi04g01649 379 ProSiteProfiles PCI domain profile. 225 379 IPR000717 -
Lsi04g01649 379 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 4-LIKE 1 379 - -
Lsi04g01649 379 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 1 379 IPR040134 -
Lsi04g01649 379 Gene3D - 316 379 IPR036388 -
Lsi04g01649 379 SUPERFAMILY Winged helix DNA-binding domain 317 379 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01649 K12178 COPS4, CSN4; COP9 signalosome complex subunit 4 - csv:101204975 659.062
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g920 . . . . . . . . . . Cma01g01896 Cma09g00166 Car01g01479 . . Cpe06g00119 . . . . . . . . . . . . . . . . . Cone17ag1332 Cone20ag0144 Lsi04g01649 Csa03g04194 Chy04g00525 . . Blo18g00821 . Bda01g01489 Bpe02g01685 . Bma01g00767 . . Cmo01g01961 Cmo09g00163 . . . Car09g00146 . Cpe02g00138 . . . . . . . Cla05g01954 Cam05g2100 Cec05g2109 Cco05g2166 Clacu05g2092 Cmu05g1968 Cre05g2086 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007182 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01649 Lsi_Chr04 FPKM 41.313126 44.927456 34.093395 36.645855 61.390995 53.13636 64.875465 50.123585 48.903831 52.980854