Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01650 ATGGACAGTGACGACGATTTCCAGTTACTTTCCTCTCCCGAGGTCGATTCCCCTTTGGTTTCGGGGAGGAAGCTGAAGCGGTTGAAGAAAGCAAGTGGTTTCTCCGAGGGTTTACTGAGGATCGATGATCAATTTTCGAGTGGAGTGTTGGGGGAATTTTCGAGGATCGATGATCGGTTTGATGATGGCCTTAAGATGCGTGAATTGAGTGCGGTGGAATCTGAAGCGAAAGATTCCGATAAATTGAACGGCCAAGATCTGGATGACTCCGATGAGCTTCAACAATCGGGATCTGGATCGAGGGATTTGGATGATGGTGGTAATTTGGGACTTAGTCTTGGTCTGGATGGTGAGGAAAATTATTCTGGAGTGGAGAAGGGCTTGGAATTTGATGAAAAAGCTGAAGATCAAAGTCCGGGGATAGAAGATGAAAGTGGCGATGTGCTGGTAGATGAACTGGAGAAGAAACGGCCAAGTTTTGACGCATTTGAGGACGAGAGAGAAGCAAAGAGGAGGAAATCGAAGAATAAAAGGCTCAAGAGCATTGGAGAGCCTGGAGATTTCAACGAGTCTGCGGTCTCCAAAAGAACTCTTGAGAAGGAGAGAAGAGAATACATTGAGCAACTCCGCGCGGAGTCTCAGAGACTCTTGCGAGATACTAGAGGAGCAGCATTCAAGCCCATGCCACTTGTTCAGAAGCCGATATCTTCAGTTCTGGAGAAGATCCGACGAAGGAAGCTTGAGCTCTCTAGGAAATCTATCAATATTGGGAATGTCATTTTAGACTGCGATGACGAAGATGATGACAATTATCAGTTCACGGAGGTTGTAACCAAGCATAGGTTGTCTGTAGAAGGGAGGGCGGATGTTGTAGAAAAACAATGCGAGGATATGGATCAGCATCCTGCTGATGATGAGAATAAAAAAGATTCAATGTGTATAGATGAACGAACTAATGGGACGACGAACATGCCCCCAGAGAGAGAAAGGGCTACTGATGAGATCACAGAAGCTTTTCGGGCTCCTGTTAATGACACTCAGGTATTTTGTTTAGTGAGTTTTGACGATGTTTCGTTCTCTCTATATTTTTTCAAGATAATTACTATGTTTATCATGTTCCAGGAACTCTTCTCTGATTCCCTAATGAGCAATGGAGATGATGTATCAAACGAGATGTCCAAAAATCTCCTGCAAGAAAATTTTACACCATCTGTATTAGCAATGAATTTGAAGCTTGAATCTGCTCCTCTTGATGATGTGTTGAACGAGACATCCAGCAGTCATCTGCAAGAAAATTTCACACCATCCGTATTGGCAATGAATTTAAGGCTCGATTCTGCAGCCCTTGATGAGGACTCCGATGAAGAGGATAATGACAAGGAGAATGTTAATCCCCATCCACGTGGTTTGTCAGACTTGCCTTTATCAGCAAGCGGGGATCCCGTTAAAGCTTTTGTTGATGATGAAGCTGAGGAAGAAGATGACAGTGACCATGATATGCGCTTCCAAGATGACGAGGAAGACGAGGACACTGATGTAGAAGAGCTTCAAGATATGATAGCAACTGCGTATGAAGAAAATCCATTAGACAATGAAAAACGCAATGAACTTCATCAGAAGTGGCTTGAGCAGCAAGATGCTGCTGGAACAGAAGATCTTCTGCAGAAATTGAAATATGGCTCAAAACTTACCAAACCATCTTTGCTGGAAGATGAAAATAATGAGGGAGAAAATGATGATTTTGAATTTTGTGAAGCTGCAGAAGATTCTCTTCCACTGGATGTGGCTCGAATGAACATTAGAAAAGTAAAGCAAATGCTTCCTCAAATGTATACAGATAAAGATGATCACTACATGTCTGATGATGAGGAAACAGAAAGGAGGCTTGCACAAGAACGTGTATTTGATAACGCTGTGAGATTCAAGCTGTTCTTTGATGAACGAAGTCTTTTACTTGATCTTTTAATCGTTCAACCATATAGTTCACAGGATGATCTAACCACTGGTTTGAAACAGGCGGGAAAATCCACATTTCTGTCACCTGCTGAGGATGAGAGCACTAGAGAAGTTTTTGGCCTTATCAAGAAACTGAATGTTGTACCTGATGTAAAAAAGAGACCAAAAGCACAATCGTTTTTGGACCCTCCACTAACCGGGGTAGGCAAGAACACATCTTCAAAGTCATCTTTCTTAGGCCGAAGTTCAAATTTATCTCTTTCTTCATCCCATAAGCATGGATCATCAACCAACAGTCGTTCTTTCATCTTCGGTCGAGACGATAGCAATAGCAGGAGCGCAATTCCAACAATGGAGGAATCTTCTGATCAGGGCCAGGGTGAAAATAATAAACCCACAAGGATTTCTTCAGCCAAGTTTAATTACTCTCAAGTGAGACCAAGTGCACAGAACACTGTACCTGAAGGTAAATCAGGCAGTTCATTGTTTGATATATTAAGGCAATCTTCTTTGCAACTTCAACGCAAAGCATGCACTTTTGGGGAGGAGTCTAGCCAAATGAGTTCTGCATTTGCGTCATTTAAATTGGAGAAGACACACATGAAGAAGCCAATAAAGACTGAAGGGAGATTCTAA 2592 42.44 MDSDDDFQLLSSPEVDSPLVSGRKLKRLKKASGFSEGLLRIDDQFSSGVLGEFSRIDDRFDDGLKMRELSAVESEAKDSDKLNGQDLDDSDELQQSGSGSRDLDDGGNLGLSLGLDGEENYSGVEKGLEFDEKAEDQSPGIEDESGDVLVDELEKKRPSFDAFEDEREAKRRKSKNKRLKSIGEPGDFNESAVSKRTLEKERREYIEQLRAESQRLLRDTRGAAFKPMPLVQKPISSVLEKIRRRKLELSRKSINIGNVILDCDDEDDDNYQFTEVVTKHRLSVEGRADVVEKQCEDMDQHPADDENKKDSMCIDERTNGTTNMPPERERATDEITEAFRAPVNDTQVFCLVSFDDVSFSLYFFKIITMFIMFQELFSDSLMSNGDDVSNEMSKNLLQENFTPSVLAMNLKLESAPLDDVLNETSSSHLQENFTPSVLAMNLRLDSAALDEDSDEEDNDKENVNPHPRGLSDLPLSASGDPVKAFVDDEAEEEDDSDHDMRFQDDEEDEDTDVEELQDMIATAYEENPLDNEKRNELHQKWLEQQDAAGTEDLLQKLKYGSKLTKPSLLEDENNEGENDDFEFCEAAEDSLPLDVARMNIRKVKQMLPQMYTDKDDHYMSDDEETERRLAQERVFDNAVRFKLFFDERSLLLDLLIVQPYSSQDDLTTGLKQAGKSTFLSPAEDESTREVFGLIKKLNVVPDVKKRPKAQSFLDPPLTGVGKNTSSKSSFLGRSSNLSLSSSHKHGSSTNSRSFIFGRDDSNSRSAIPTMEESSDQGQGENNKPTRISSAKFNYSQVRPSAQNTVPEGKSGSSLFDILRQSSLQLQRKACTFGEESSQMSSAFASFKLEKTHMKKPIKTEGRF 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23979714 23984114 - Lsi04G016500.1 Lsi04g01650 661699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01650 863 MobiDBLite consensus disorder prediction 298 328 - -
Lsi04g01650 863 MobiDBLite consensus disorder prediction 486 513 - -
Lsi04g01650 863 PANTHER DNA LIGASE-LIKE PROTEIN 418 644 - -
Lsi04g01650 863 PANTHER DNA LIGASE-LIKE PROTEIN 374 420 - -
Lsi04g01650 863 PANTHER DNA LIGASE-LIKE PROTEIN 672 862 - -
Lsi04g01650 863 PANTHER DNA LIGASE-LIKE PROTEIN 1 347 - -
Lsi04g01650 863 MobiDBLite consensus disorder prediction 717 786 - -
Lsi04g01650 863 MobiDBLite consensus disorder prediction 149 172 - -
Lsi04g01650 863 MobiDBLite consensus disorder prediction 449 513 - -
Lsi04g01650 863 Coils Coil 195 215 - -
Lsi04g01650 863 MobiDBLite consensus disorder prediction 298 315 - -
Lsi04g01650 863 MobiDBLite consensus disorder prediction 71 195 - -
Lsi04g01650 863 MobiDBLite consensus disorder prediction 709 786 - -
Lsi04g01650 863 MobiDBLite consensus disorder prediction 71 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01650 - - - csv:101210293 1214.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g923 . . . . . . . Bma01g02312 . . Cma01g01897 Cma09g00165 Car01g01480 . . Cpe06g00118 . . . . . . . . . . . . . . . . . . . Lsi04g01650 Csa03g04195 Chy04g00524 . . . . . . . . . . Cmo01g01962 Cmo09g00162 . . . Car09g00145 . Cpe02g00137 . . . . . . . Cla05g01953 Cam05g2099 Cec05g2108 Cco05g2165 Clacu05g2091 Cmu05g1967 Cre05g2085 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008724 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01650 Lsi_Chr04 FPKM 15.18254 16.14834 29.226 26.717119 14.877851 16.57962 15.19402 17.416792 18.134279 18.827311