Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01653 ATGAGTACAAGAGAGAGGGAACGAGATCTAGAGCTTTTGATCCCAGTCGCTACAGTTTCTGAAAATGGAGCCTCCAAATCTTCCTCCGTCCCCGCTGCCGCTTTATCCAATCATCATTCCGGCCGAGAGGCATTTGCTAAAGTCATTCGCAGCTGGGCGTCGAAGAAGTTCATGACAGGATGTGTAATTCTTCTACCAATTGCTATTACATTCTACATCACATGGGGCTTCATTCGTTTTGTTGATGGTTTCTTCTCACCAATATATAATCACTTAGGGATTAATATTTTTGGGCTTGGGTTTATTACCTCCATCACATTCATCTTTCTTGTTGGTATTTTCATGTCATCTTGGTTGGGAGCTTCTGTTCTTACTCTTGGTGAATGGTTCATAAAGAAAATGCCACTTGTAAGCTATATTTACACGGCCTCAAAGCAAATTAGTACTGCAATATCACCAGATCAAACTTCAAATGCCTTCAAGGAGGTAGCAATTATCAGGCACCCCCATGCTGGCAAGTATGCTTTTGGATTCATCACTTCCTCCGTTGTTCTTCAGAGCAGAATGGAAGAGGAAGAACTCTATTGTGTTTATGTCCCTACTAATCATCTCTATCTTGGAGACATATTTTTAATGAGTTCCAAGGACATCCTGAGGCCTAATCTATCTGTCCGAGAGGGAATTGAAATTGTGATCTCTGGAGGGATGTCAGTTCCTCAGATACTGACCACAGTGGATGCAAGAGTAATTCCAACAAGTGGAATCGAAAAACTTTGCAAAACCAAAAGCAATGAAGCCAATTTGAGCTTCATTTCATTGTTACAATACGAAAAGGCTTTAGAGTACTGA 849 41.11 MSTRERERDLELLIPVATVSENGASKSSSVPAAALSNHHSGREAFAKVIRSWASKKFMTGCVILLPIAITFYITWGFIRFVDGFFSPIYNHLGINIFGLGFITSITFIFLVGIFMSSWLGASVLTLGEWFIKKMPLVSYIYTASKQISTAISPDQTSNAFKEVAIIRHPHAGKYAFGFITSSVVLQSRMEEEELYCVYVPTNHLYLGDIFLMSSKDILRPNLSVREGIEIVISGGMSVPQILTTVDARVIPTSGIEKLCKTKSNEANLSFISLLQYEKALEY 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24004080 24006741 - Lsi04G016530.1 Lsi04g01653 661702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01653 282 PANTHER COV-LIKE PROTEIN 1 1 251 IPR007462 -
Lsi04g01653 282 Pfam Protein of unknown function (DUF502) 103 203 IPR007462 -
Lsi04g01653 282 PANTHER PROTEIN LIKE COV 1-LIKE 1 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01653 - - - bhj:120091630 502.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01653 Lsi-Chr4:24004080 Lsi06g00862 Lsi-Chr6:18153509 5.87E-131 dispersed
Lsi04g01653 Lsi-Chr4:24004080 Lsi11g00257 Lsi-Chr11:2602377 1.18E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g933 . . . . . . . . . . Cma01g01901 Cma09g00162 Car01g01483 . . Cpe06g00116 . . . . . . . . . . . . . . . Cone4ag1906 Cone7ag1821 . . Lsi04g01653 Csa03g04198 Chy04g00520 . . . . . . . . . . Cmo01g01964 Cmo09g00160 . . . Car09g00143 . Cpe02g00134 . . . . . . . Cla05g01951 Cam05g2097 Cec05g2106 Cco05g2162 Clacu05g2089 Cmu05g1965 Cre05g2083 . . . Cme04g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000845 2 4 2 1 2 2 6 2 3 3 2 3 5 3 3 6 2 3 5 3 3 2 3 2 3 2 3 3 4 2 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01653 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0