Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01655 ATGAGAAGTTACCGTGAGTTCCCACCCAGCAAACCCAACATGGCAAAGAGATCAGATTTTGCTCAGAAGCTGTTAGATGATCTCAGATTAAGGAAGGAGCGAATGGCCGTTGCATCGCAGACTTCGAACCATTCCAAAACTACAATAATCGATGCATATGCTTACTCGAAACAAATTCATCGAGAATCTGACCTTGTTATCTTATATCATAACATATATGATTCGATGCAGAGTATTCCCAAGACTGGGAACACAATAAACACAAGGTATGGCGGAGGCAATAAATCACCGATGACTAATGATACTTCAAACCAAATTGTTCCTTACACTAAAGGCCGAAACTCTGAACAAATAGGAGACTTGTCCATGGCCTTGGCTTTTGCACTTGAAAATGGAGGAAAACTGAGCGGAAATACTTCATCGGGAAACAATTTGATGCTGGGCTTCCTGCAACAAATTGGTAGGAGAACCTTTGAAATAGGGAAAATGAATAAAAGAGGCGGCCTGGACAGGAACCACAATGCAACTGGATACTTTCCAACCATCTCACACCTTCATATTAAGGAGATATCGAAAGGGGCACAAAAATTGAACCAGATTCTAAGAACTTGCTCAAATGGTTCTGATTTTGGCAGATGTTCCATCGAAATTGGACAGGAACTGTTGAAGGGGGCTATGGATTTGGAGGAGTCTTTGAGGATGCTTGTGAACTTGCACGAGGCTTCAGAGCACATGATCAGCCCACAACAGAAGAATAGGATTGTACTTCTAGAGAATGAAGAAGATGCTGAAGAGAATAAAGATGAAACAATTGATCAGAAACTTTACAAACCACGGTTCTCCTTGGACAATCTCTCCCTAAATTCACGCAGCAGCCAAGAAGTCAAAGGAAATGGTCACAATCAGAAGTTAGCAACCCTGAGATACACTGCAGAGGGAGGAAACTTCAACCATGAAGAGCAACCTCTAACTACTGTAAAATTGAGTTTCCATAGAAGATCAGCAACCTGTGGCCATGATGTCAAAACTTCAAACACGCATGAGAAGGTGGGAATCTCAAATGTAATTGCAAAACTGATGGGGCTAGATAATCTCGCAGACAATTCAAACTACGCACATAAGGACTCAGGTTCCAAGCAAAAGGTCACACAAAAGGATCTGCAGCCATCCGCCAGGGGTATCACCAAAAAAGCTGAGCCAAGGACAAATATTACAGAAAGTCGGTCCAACTCCAGAAATCCAAAACCAATTACATCAGATAAGAATTCAACTGTGGTGAACACCATATTTGTTTCACAAGCAATGAACGACTTTCCTACAAATAATGCAAGTCCTCGAGCCATCACTTTTAGTGGAAAACCATCATGGAAAGGCATTGAAGGAATAAGGCCACAAACTAGCCCATCAACACCAACCCTCACAATATTTAAGCAACAAAACAAGGATGAAATGAGGCAGAGAGTCCCAAATCAGAAGGACCATCAGGAAGGACTTACAAAGCAACTCCACATAAAGCACAGGGAGCAAAAAGGTACAGACAGCCACAGGGATGAACATAGAGAAGTATTAAAGAAAGGAGTGCTGCAGAAGGATTATCGGGAAGGTCATATGAAGCATCATCACCAAAAGCACAGGGAGCTAAACATTATGGAAAGGGATCAAAAGAGAGGAGAACTTAGAAGGAACAGGATGCAGCAGATGGAAGCACAATTGCATAAAAAATCAGAACATGCAATCATACTGCAAGGATATAAAGAAAGAACATTTCCATTAGAAAAGAGACATCCAGACAAACTTCAATCAAGAATGCAGCACCAGCAACAGTCCCCAAACAGTCCCAAATACCAGCAGCCACCTATACTCCATAAAGCAGAGATGGGAGACATAAATCATCATATAGAAGAGAAGAAACAGAAGAATGGAAAACAGACGGTGCAGGAGAGAAATCAAAAGAGAAATGGGATCACGTCCAAGAGTTTAACAAAACCAGTCCATGACACATTCACTTTTCCAAAGAAGCAGCAGGATATGAACCATGTCAGACGAGGTAAGAAAAGCTGCAAAGAAACCATCACAGCTCACAACTCTTACACACTTCCTAACAATAGATGTCCTGAAAATCCTTCCAGAGAAAAGAACTGCTATGATTTAAATGACAAAACAATTGACATAACTCACAAGAGCGTAGAACAAAGTTCCTCTACAAGGGACTCCGAATCTAAATTGGGAAAAGAGCCAGTTATGGAAAAGCAACATGCTAAGGTACCTGTGAAGAATGAGTTCACGTCTACAAAAATGCAGAAAAGTGAGGGGCTTATAATTAATGAAGCATATGCAAAGAAACAGAAAAGTCCAACACTAGAAGAGGTGGAACAAGAAAAACATGGAAAGTTTGATGCACTAGATGGACCGGAAGTCCTTGGAGCAAATGGATCTAAAGAAGTGGAAGCTGGTCTTGTTGAATCCAGAGAAACTGTAGTAAGTATCCAGCCACTGAATAGCGCACCAGATTCACACAAAGAGACTGAGCAGGTTTTGACACTGCCCATTCCTGCTGAAGATGAATGCCATAGCTTGAAAGAGCCACAAATATCAGCTCCAAATGACAGTTGCCAGGAAACAATCTCCATCAGTACAAGCAATCAACAAGATCAGAGCTCAGTTTTTGGCAGAGGTGAAATCAACAGCTCCAAAATTGTAATAAATGCAGTAGAAGGTAAGCAGACTTCAATTACCCAAGTTCATTCCATAAATAAAGACAACCCGTATGCAGAACAATACAACATGAAAACCTTATATCCCCCACATTTGGCGCACCTGCATAGTTTTTCCAAGTCAAGAAAACAAGAGACGCTGACAGAAAGTGAAAACCACCTTAAGCAGACGCTTATAACAAGTGAATGGTTCCTAAATGCAGCAGAGGCACTTTTCAAACTCAACATCCCTAGCTTCATTCTTCATGACAATGGTCATCATAGCCATTTAAAAAATGGAAGAAATTTCACAATAGATTGTAGTTACGAGCTCATGAAGCGAAAGGGAATACGGCAAGAGCTCAACAATCATCCTTGCACAAACATTTCAGTAAGGTCCAGAAAAATAGAATCTTTGGATGACTTGATCAAGCAGCTGCATAGAGACATTGAGGCATTGAAATTCTATGGTAGGGATGGTAACCCAGAATGTGAAGTGCAAGACTACTTGCCCAAAATGCTTGAAATTGATATCTATAACCAGGAACCTGACTTTAATAGTATGTGGGACTTGGGATGGAATGAGACCACATTCGTGTTTTTTGAAAGAGAGGAAGTTGTAAGGGATGTGGAAAAGCATGTTCTGAGTGGACTGCTCGATGAACTCACAAGAGACCTTGTACATGTCTGTCATCTTTTGACAAAAAGAAGGGGCAGAGAGATTTGA 3420 41.08 MRSYREFPPSKPNMAKRSDFAQKLLDDLRLRKERMAVASQTSNHSKTTIIDAYAYSKQIHRESDLVILYHNIYDSMQSIPKTGNTINTRYGGGNKSPMTNDTSNQIVPYTKGRNSEQIGDLSMALAFALENGGKLSGNTSSGNNLMLGFLQQIGRRTFEIGKMNKRGGLDRNHNATGYFPTISHLHIKEISKGAQKLNQILRTCSNGSDFGRCSIEIGQELLKGAMDLEESLRMLVNLHEASEHMISPQQKNRIVLLENEEDAEENKDETIDQKLYKPRFSLDNLSLNSRSSQEVKGNGHNQKLATLRYTAEGGNFNHEEQPLTTVKLSFHRRSATCGHDVKTSNTHEKVGISNVIAKLMGLDNLADNSNYAHKDSGSKQKVTQKDLQPSARGITKKAEPRTNITESRSNSRNPKPITSDKNSTVVNTIFVSQAMNDFPTNNASPRAITFSGKPSWKGIEGIRPQTSPSTPTLTIFKQQNKDEMRQRVPNQKDHQEGLTKQLHIKHREQKGTDSHRDEHREVLKKGVLQKDYREGHMKHHHQKHRELNIMERDQKRGELRRNRMQQMEAQLHKKSEHAIILQGYKERTFPLEKRHPDKLQSRMQHQQQSPNSPKYQQPPILHKAEMGDINHHIEEKKQKNGKQTVQERNQKRNGITSKSLTKPVHDTFTFPKKQQDMNHVRRGKKSCKETITAHNSYTLPNNRCPENPSREKNCYDLNDKTIDITHKSVEQSSSTRDSESKLGKEPVMEKQHAKVPVKNEFTSTKMQKSEGLIINEAYAKKQKSPTLEEVEQEKHGKFDALDGPEVLGANGSKEVEAGLVESRETVVSIQPLNSAPDSHKETEQVLTLPIPAEDECHSLKEPQISAPNDSCQETISISTSNQQDQSSVFGRGEINSSKIVINAVEGKQTSITQVHSINKDNPYAEQYNMKTLYPPHLAHLHSFSKSRKQETLTESENHLKQTLITSEWFLNAAEALFKLNIPSFILHDNGHHSHLKNGRNFTIDCSYELMKRKGIRQELNNHPCTNISVRSRKIESLDDLIKQLHRDIEALKFYGRDGNPECEVQDYLPKMLEIDIYNQEPDFNSMWDLGWNETTFVFFEREEVVRDVEKHVLSGLLDELTRDLVHVCHLLTKRRGREI 1139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24018163 24023289 - Lsi04G016550.1 Lsi04g01655 661704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01655 1139 MobiDBLite consensus disorder prediction 647 664 - -
Lsi04g01655 1139 PANTHER EXPRESSED PROTEIN 14 1128 - -
Lsi04g01655 1139 PANTHER OS01G0228800 PROTEIN-RELATED 14 1128 - -
Lsi04g01655 1139 MobiDBLite consensus disorder prediction 602 616 - -
Lsi04g01655 1139 MobiDBLite consensus disorder prediction 404 421 - -
Lsi04g01655 1139 MobiDBLite consensus disorder prediction 596 617 - -
Lsi04g01655 1139 MobiDBLite consensus disorder prediction 726 754 - -
Lsi04g01655 1139 MobiDBLite consensus disorder prediction 634 665 - -
Lsi04g01655 1139 MobiDBLite consensus disorder prediction 370 421 - -
Lsi04g01655 1139 MobiDBLite consensus disorder prediction 370 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01655 - - - csv:101209549 1787.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01655 Lsi-Chr4:24018163 Lsi11g00257 Lsi-Chr11:2602377 5.55E-09 dispersed
Lsi04g01655 Lsi-Chr4:24018163 Lsi06g00860 Lsi-Chr6:18128234 4.55E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g935 Blo01g01560 . Bda01g00533 . Bpe02g00395 . . Bma01g02317 . . Cma01g01904 . Car01g01485 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01655 Csa03g04200 Chy04g00518 . . . . . . . . . . Cmo01g01966 . . . . . . Cpe02g00132 . . . . . . . Cla05g01949 Cam05g2095 . Cco05g2160 Clacu05g2087 Cmu05g1963 Cre05g2081 . . . Cme04g00581
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009852 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01655 Lsi_Chr04 FPKM 6.272489 6.592799 0.0 0.0 0.0 0.148558 0.0 0.0 0.0 0.083728