Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01657 ATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGAGAACAATCCAGAACAGATCACATCGAAGGTAAATGAGCTAAAGGCTAAGTTAGGATCCTTAGTTGGACGCAATGCATTATATTGCAGTGATGCATGCTTGAAAAGATATCTAGTGGCCAGGAATTGGAATGTAGACAAAGCAAAGAAAATGCTGGAAGAGACATTCAAATGGAGAGCTACATATAAGCCTGAGGAAATTCGTTGGCCTGAAATAGCATCTGAAAGTGAGACTGGAAAACTTTATCGAGCAAGTTTTCACGACCGAGAAGGAAGAACTATTCTTATAATGAAGCCAGGAAAGCAGAACACGACATCAATAGAAAATCAGATCCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCTGAAGGTCAGGAGCAGATGTCATGGCTAATTGATTTTAATGGTTGGTCTCTTAACACCAGCGTGCCAATCAAATCTGCACGGGAGACCGTCAGCATCTTGCAAAACCACTATCCCGAGAGACTAGCGCTTGCGTTTCTATATAATCCCCCAAGGATATTTGAAGCGTTTTGGAAGGTAGTCAAGTACCTTTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTTTATCCTAAGAAGCAAGAAAGTGTTGAACTCATGAAGTCATATTTTGATGAGGAGAATCTTCCATCAGAGTTTGGAGGAAAAGCCCAACTGGAATATGTCCATGAGGAGTACTCTAGATTAATGATTCAAGATGATATTAAATGTGTTGCCTTTTGGGAACATGGTGAAAAGCAACACCATCTTGTCAATGGCTACTCCAGAGCAGTGGTGGCTCCAGAGTGA 861 41.23 MFGRWSTSHHEEENNPEQITSKVNELKAKLGSLVGRNALYCSDACLKRYLVARNWNVDKAKKMLEETFKWRATYKPEEIRWPEIASESETGKLYRASFHDREGRTILIMKPGKQNTTSIENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLNTSVPIKSARETVSILQNHYPERLALAFLYNPPRIFEAFWKVVKYLLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDIKCVAFWEHGEKQHHLVNGYSRAVVAPE 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24041024 24044514 + Lsi04G016570.1 Lsi04g01657 661706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01657 286 CDD SEC14 99 240 IPR001251 -
Lsi04g01657 286 Pfam CRAL/TRIO, N-terminal domain 21 66 IPR011074 -
Lsi04g01657 286 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 6 285 - -
Lsi04g01657 286 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Lsi04g01657 286 Gene3D - 5 274 IPR036865 -
Lsi04g01657 286 SUPERFAMILY CRAL/TRIO N-terminal domain 10 83 IPR036273 -
Lsi04g01657 286 SMART sec14_4 87 242 IPR001251 -
Lsi04g01657 286 SUPERFAMILY CRAL/TRIO domain 81 257 IPR036865 -
Lsi04g01657 286 Pfam CRAL/TRIO domain 91 239 IPR001251 -
Lsi04g01657 286 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Lsi04g01657 286 PANTHER GH16843P 6 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01657 - - - csv:101203752 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01657 Lsi-Chr4:24041024 Lsi10g00391 Lsi-Chr10:5931431 1.38E-12 dispersed
Lsi01g01714 Lsi-Chr1:15869277 Lsi04g01657 Lsi-Chr4:24041024 1.27E-62 transposed
Lsi04g00990 Lsi-Chr4:10760723 Lsi04g01657 Lsi-Chr4:24041024 1.60E-15 transposed
Lsi04g02351 Lsi-Chr4:30690052 Lsi04g01657 Lsi-Chr4:24041024 1.98E-66 transposed
Lsi05g01598 Lsi-Chr5:23717290 Lsi04g01657 Lsi-Chr4:24041024 1.18E-16 transposed
Lsi07g00198 Lsi-Chr7:2144750 Lsi04g01657 Lsi-Chr4:24041024 1.54E-137 transposed
Lsi07g00394 Lsi-Chr7:4212826 Lsi04g01657 Lsi-Chr4:24041024 8.82E-31 transposed
Lsi10g01362 Lsi-Chr10:17797815 Lsi04g01657 Lsi-Chr4:24041024 8.86E-08 transposed
Lsi01g00678 Lsi-Chr1:5460332 Lsi04g01657 Lsi-Chr4:24041024 1.32E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01657 Lsi_Chr04 FPKM 0.78483 0.887366 1.641283 1.758749 1.584294 1.56589 1.192892 0.652952 1.571842 1.465552