Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01660 ATGGCTATAGCTCGGCTAGCTCGCCAAGCAAAGCGTTCTTATGGGTTTTGCGCGAAGTTGACGGCAGTGGTTATTTTAGGCCTTTGCTTTATAGTCGTTTGGTCTATTTTTGCTTCTCCTTCCACGTCCGTGACGATTCGGAGGGAAAGTTTCGACAACATTGGTGAACCCGTAACAGGAAACACGAAAGTAAAGCATCCTGGAGCTCAAAATGATATTAGGAAGAAGATAGATGAGGGTAAATTTAACAGGGACACGAAAGATAAAGTGAAATCCGATCTAGATGGAAGGGATATGAAAAAGGTTAACGGTTCAAATTCCAAGTCTCCCAGTAACCATGCATCTGAAAAGAAGCATGGAGCAGCAAAAGTGAAAAATGAGAAACAGAAAGAAAATAAACCAGAGGTTCCAAGAAAAGAGAATCAAGGATCAGAGGAATCTGAGGATGAAGATGCAGAAAAGGGAAATGAGGAGGAAGAACAGGAAGTGGTAGATGATCAAGAAGCAGAGCTAAAGGATGATGAAGCTGAAACAGAAGGTGATCTGGGTGAGTCAGATCAGGAACCTGAGGAGAGGATTGAGCCAAAAGATAAAGGGAAAAAATTCAAGAGAAAAGGTCCATTGTTTGATCCAAATGCTCACTATAGTTGGAAACTATGCCGAGCAAGAAGTAAATACAATTACATCCCTTGTGTTGACATTGAAGCTGGAGTGGCTAGACAGCAGGGCTATCGGCATAGGGAAAGGAGTTGCCCTAGAGCACCTCCAATGTGCCTTGTGCCTCTTCCTCCCAGTGGATACAGGCCCCCAGTGCACTGGCCGGAGAGCAATTCAAAGATACTTTACAAGAATGTGGCACATCCAAAACTTGCTGCTTTCATCAAGAAACATGATTGGTTGGTGGAAGCTGGAGAGTTCCTTACATTTCCTCAGAATCATTCTGAGCTCAACGGTGGAGTTATCCACTATCTCGAGTCCATTGAAGAGATGGTACCCGATATTGAGTGGGGCAAGAATATTCACGTGATTCTTGAAATTGGATGCACATATGCAAGTTTAGGGGCTTTTCTTCTTGAAAAGGATGTCATAACATTGTCATTGGGCTTGAAGGATGACCTTGTGGACTTGGCTCAAGTTGCACTTGAGCGAGGATTTCCAACTCTGGTTAGCCCTTTTAGGAGTAGAAGACTTCCTTTTCCTAGTGGTGTTTTTGATGCCATTCATTGTGGGGGATGCAGTAGAAGTTGGCATTCCAATGATGGGAAGCTTCTTCTAGAAATGAATAGAATTTTAAGGCCTGGCGGATACTTCATCTTGTCCAGTAAATATGACAGCATTGAAGAAGAAGAAGCAATGAGTTCATTGACGGCTTCAATTTGTTGGAACATTCTGGCACATAAAACTGATGAAGTCAGCGAAGTGGGTGTTAAGATATACCAGAGACCTGAATCAAATGATATATTTGAGCTGAGGAGAAGGAAAAATCCACCTTTATGCAAGGAAAAGGAAATCCCTGATGCTGCCTGGTGCCCTAAATTTTTTTGTCCGAAAATTGCCTTAACTCATATTTTGAAATTCAATTTTGGACATGATAATAATCGTGAGGAAAAAGTTCTGTACGTGCCTATGAGAACCTGCTTACACACCATTCCAACTTCTATTGAACAGCACGGAGCAGAATGGCCTGAAGAATGGCCGAAGAGACTTGAAACTTTTCCTGAGTGGTTGAGCAATGACAAAGAAAAGATAATTGCAGATACTAATCACTGGAAAGCAATTGTTGAGAAGTCATATCTCACTGGAATAGGTATTGACTGGTCAAGTGTGCGAAATGTGATGGACATGAAAGCCATTTATGGGGGGTTTGCTGCTGCTGTCTCGCAGCAGAAGGTTTGGGTGATGAATGTGATCCCAGTCCATGCGCCAGATACACTTCCGATAATCTTCGAACGTGGTCTGGTTGGCATCTACCATGACTGGTGTGAGTCATTTGGTACTTATCCACGATCATACGACCTTCTGCACGCCGATCATTTGTTCTCAAGGCTTAAGAACAGGTGCAAGGAGCCTGTATCGATCGTGGTTGAGATGGATCGTATATTACGACCTGGAGGTTGGGCGATTATACGTGAAAAACTGGCAATTATGAATCCATTGGAAGAGATTCTCAAGAGTCTACAATGGGAGATTCGGATGAGTTATTCCCATGGAGATGAGGGAATCCTATGTGCACAGAAAACCATGTGGCGGCCTTAA 2256 43.09 MAIARLARQAKRSYGFCAKLTAVVILGLCFIVVWSIFASPSTSVTIRRESFDNIGEPVTGNTKVKHPGAQNDIRKKIDEGKFNRDTKDKVKSDLDGRDMKKVNGSNSKSPSNHASEKKHGAAKVKNEKQKENKPEVPRKENQGSEESEDEDAEKGNEEEEQEVVDDQEAELKDDEAETEGDLGESDQEPEERIEPKDKGKKFKRKGPLFDPNAHYSWKLCRARSKYNYIPCVDIEAGVARQQGYRHRERSCPRAPPMCLVPLPPSGYRPPVHWPESNSKILYKNVAHPKLAAFIKKHDWLVEAGEFLTFPQNHSELNGGVIHYLESIEEMVPDIEWGKNIHVILEIGCTYASLGAFLLEKDVITLSLGLKDDLVDLAQVALERGFPTLVSPFRSRRLPFPSGVFDAIHCGGCSRSWHSNDGKLLLEMNRILRPGGYFILSSKYDSIEEEEAMSSLTASICWNILAHKTDEVSEVGVKIYQRPESNDIFELRRRKNPPLCKEKEIPDAAWCPKFFCPKIALTHILKFNFGHDNNREEKVLYVPMRTCLHTIPTSIEQHGAEWPEEWPKRLETFPEWLSNDKEKIIADTNHWKAIVEKSYLTGIGIDWSSVRNVMDMKAIYGGFAAAVSQQKVWVMNVIPVHAPDTLPIIFERGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKNRCKEPVSIVVEMDRILRPGGWAIIREKLAIMNPLEEILKSLQWEIRMSYSHGDEGILCAQKTMWRP 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24056103 24061318 - Lsi04G016600.1 Lsi04g01660 661709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01660 751 PANTHER METHYLTRANSFERASE PMT28-RELATED 529 751 - -
Lsi04g01660 751 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 543 712 IPR029063 -
Lsi04g01660 751 MobiDBLite consensus disorder prediction 112 145 - -
Lsi04g01660 751 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 227 510 IPR004159 GO:0008168
Lsi04g01660 751 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 527 746 IPR004159 GO:0008168
Lsi04g01660 751 MobiDBLite consensus disorder prediction 146 188 - -
Lsi04g01660 751 CDD AdoMet_MTases 343 440 - -
Lsi04g01660 751 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 9 510 IPR004159 GO:0008168
Lsi04g01660 751 MobiDBLite consensus disorder prediction 189 207 - -
Lsi04g01660 751 MobiDBLite consensus disorder prediction 68 102 - -
Lsi04g01660 751 MobiDBLite consensus disorder prediction 54 207 - -
Lsi04g01660 751 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 250 443 IPR029063 -
Lsi04g01660 751 Gene3D Vaccinia Virus protein VP39 319 502 IPR029063 -
Lsi04g01660 751 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 529 751 IPR004159 GO:0008168
Lsi04g01660 751 PANTHER METHYLTRANSFERASE PMT28-RELATED 9 510 - -
Lsi04g01660 751 Coils Coil 157 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01660 - - - csv:116402714 1323.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01074 Lsi-Chr4:12913365 Lsi04g01660 Lsi-Chr4:24056103 1.85E-147 dispersed
Lsi04g01660 Lsi-Chr4:24056103 Lsi05g02009 Lsi-Chr5:27143007 3.52E-92 dispersed
Lsi04g01660 Lsi-Chr4:24056103 Lsi03g00357 Lsi-Chr3:4217809 7.14E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g941 Blo01g01561 . Bda01g00531 . Bpe02g00393 . . Bma01g02319 . . Cma01g01907 . Car01g01489 . . . . . . . . . . . . . . . . . . Cone4ag1910 Cone7ag1824 . . Lsi04g01660 Csa03g04205 Chy04g00513 . . . . . . . . . . Cmo01g01970 . . . . . . Cpe02g00129 . . . . . . . Cla05g01944 Cam05g2087 Cec05g2100 Cco05g2154 Clacu05g2082 Cmu05g1958 Cre05g2077 . . . Cme04g00572
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01660 Lsi_Chr04 FPKM 33.657021 35.124802 4.900686 3.814137 8.118559 10.595333 9.271917 0.0 0.194586 0.0