Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01666 ATGGGAAACCAAATATGTAGAAATGGCAGCAAAAAATCAACCACTGATCTGAAATTTGATATTGCGATGGGGTCTGGGTCGAATTGGACGGCGAAGCAGAACAAAGTCTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTGAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAGGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGCCAAAGTTTTCCAGAGTATTTCAAAGAAAAACTAATAAAGAAAGATGAGGAGTCTACGATTGCACTGAAGTACGAAATGTGGGAAGACGAGAAGCCCATTTGCATTGAAGCCCGTTTAAGAAAAGCCCACACGAACTGGTTCAAGTCCAGAGACCCGAAAGACTCGAAGATAAAGTTTCGTCCCGCCGAGAGAAGGGAGTCATGGATGCTAATTCGTCTTCGTGTAAGGTGCGGCCCGTTTTCAATCTTTCCTGCTTGCACGGTTGAATTACTTGCCCTTTCCGGCTTTGATGAAACCGAAATCTCTGGATGCGTACTTTCTCTCATGGACGAATCTATCTTTTTCATTTTTCCATCTTCTGCACAATGTGTTAAAGTTCAGGAACTCGTTTCAAATTGTTTGCTCGTTTTTTTTGGCTGTTCATGTGATAAGATTCTTCGAGTCTGCTTTCGTGGAATCGGCATGTCGATTGCGGACACCGATATATAG 816 45.83 MGNQICRNGSKKSTTDLKFDIAMGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRQSFPEYFKEKLIKKDEESTIALKYEMWEDEKPICIEARLRKAHTNWFKSRDPKDSKIKFRPAERRESWMLIRLRVRCGPFSIFPACTVELLALSGFDETEISGCVLSLMDESIFFIFPSSAQCVKVQELVSNCLLVFFGCSCDKILRVCFRGIGMSIADTDI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24095584 24100837 + Lsi04G016660.1 Lsi04g01666 661715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01666 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 23 110 IPR044636 GO:0003700
Lsi04g01666 271 Gene3D - 22 88 - -
Lsi04g01666 271 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Lsi04g01666 271 CDD SANT 28 75 IPR001005 -
Lsi04g01666 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 23 110 - -
Lsi04g01666 271 SMART sant 25 77 IPR001005 -
Lsi04g01666 271 ProSiteProfiles Myb-like domain profile. 27 75 IPR001005 -
Lsi04g01666 271 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01666 - - - csv:101203667 170.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01666 Lsi-Chr4:24095584 Lsi11g01108 Lsi-Chr11:19289303 8.25E-32 dispersed
Lsi04g01666 Lsi-Chr4:24095584 Lsi04g01670 Lsi-Chr4:24122630 4.35E-26 proximal
Lsi10g00367 Lsi-Chr10:5673126 Lsi04g01666 Lsi-Chr4:24095584 4.40E-27 wgd
Lsi04g01666 Lsi-Chr4:24095584 Lsi08g01396 Lsi-Chr8:22238706 1.48E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g948 Blo01g01563 . Bda01g00528 . Bpe02g00390 . . Bma01g02321 . . Cma01g01911 Cma09g00157 Car01g01492 . Sed05g2314 Cpe06g00112 . Bhi04g00244 Tan02g0788 Cmetu01g0968 . Hepe02g0493 . Lcy13g1988 . . . . . . . Cone4ag1912 . Cone17ag1343 Cone20ag0138 Lsi04g01666 Csa03g04211 Chy04g00508 . Blo17g00801 Blo18g00814 Bda08g01283 Bda01g01494 Bpe02g01690 Bpe05g00091 Bma01g00763 . . Cmo01g01973 Cmo09g00156 . . . Car09g00139 . Cpe02g00126 . . . . . . . Cla05g01939 Cam05g2083 Cec05g2096 Cco05g2147 Clacu05g2079 Cmu05g1953 Cre05g2074 . . . Cme04g00564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001876 2 2 2 2 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 3 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01666 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 5.339983 4.76418 4.771203 0.0 0.0 0.0