Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01667 ATGTCTAATCTTGTCATCAATAAAAATATAATTTTGGGATCATCTTCAGTGGCTCGTAGGAAAATATTATCTGAGATGGGTTATGAATTCACCATTATGGTATATTCTCTACCTAGATGTACTTACATGACCTGTAAACTCTCCCTTCTCAAAATGTTTAACTTTTCCTCTCCCAAAATGAAGTCTGCAGATATTGATGAGAAAGCCATACGCAAAGAAAAGCCGGAAGAGTTGGTTGTGGCTCTTGCTGAAGCAAAGGCTGATGCCATCATATCCAATTTTCAAAAAATTCATACACATGAAAAGGAAGCAGAACCAACAGTTTTGATTGCTGCTGACACAGCAGATGCCATCTTAGGAAGACTTTCCACGGATGATTTTAAGAAGGATGCAGAGCCAACACTATTGATTACTTCTGATCAAACCCGTTGTCTATTGTACCCTCAAAACATAAATGGTCTTTTCGTGATAACTTATGCCATAACGACACTTTCTTGTTCTGTTTGCAAAGTTCCTCTTAGACATACTTTCTTACTTCTATTGGTAATTGATGTGGAGGTGGTGATCTATGAAGGTGTCATCAGAGAAAAACCAGCCAGCAAGGAGGAAGCACGACAATTTATGAAAGATTATTCAGGAGGGCATGCAGCCACACTTGGATCTGTACTTGTTACAAACCTCAAAACAGGATTTAGGAAAGGAGAATGGGATCGAGTAGAGATCTTTTTCAATGAAATACCTGATGAAGTCATCGACAAGCTGGTCGAGGAGGGGACTGTGCTCAATGTTGCTGGAGGGCTGATTATCGAGCATCCTTTAATTTTACCGTATGTGAAAGAAGTGGTAGGGACGACAGATAGTGTGATGGGTCTTCCTAAGGCTCTGACTGAGAAACTCTTGAAGGAAGCCATATAG 915 40.0 MSNLVINKNIILGSSSVARRKILSEMGYEFTIMVYSLPRCTYMTCKLSLLKMFNFSSPKMKSADIDEKAIRKEKPEELVVALAEAKADAIISNFQKIHTHEKEAEPTVLIAADTADAILGRLSTDDFKKDAEPTLLITSDQTRCLLYPQNINGLFVITYAITTLSCSVCKVPLRHTFLLLLVIDVEVVIYEGVIREKPASKEEARQFMKDYSGGHAATLGSVLVTNLKTGFRKGEWDRVEIFFNEIPDEVIDKLVEEGTVLNVAGGLIIEHPLILPYVKEVVGTTDSVMGLPKALTEKLLKEAI 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24101393 24105796 + Lsi04G016670.1 Lsi04g01667 661716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01667 304 Hamap dTTP/UTP pyrophosphatase. 9 304 IPR003697 GO:0047429
Lsi04g01667 304 Pfam Maf-like protein 49 302 IPR003697 GO:0047429
Lsi04g01667 304 PANTHER MAF-LIKE PROTEIN 8 34 - -
Lsi04g01667 304 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 115 303 IPR003697 GO:0047429
Lsi04g01667 304 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 61 114 IPR003697 GO:0047429
Lsi04g01667 304 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 8 34 IPR003697 GO:0047429
Lsi04g01667 304 SUPERFAMILY ITPase-like 186 302 IPR029001 -
Lsi04g01667 304 SUPERFAMILY ITPase-like 49 115 IPR029001 -
Lsi04g01667 304 Gene3D - 45 303 IPR029001 -
Lsi04g01667 304 PANTHER MAF-LIKE PROTEIN 115 303 - -
Lsi04g01667 304 PANTHER MAF-LIKE PROTEIN 61 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01667 - - - csv:101203418 364.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01667 Lsi-Chr4:24101393 Lsi07g00250 Lsi-Chr7:2759317 3.15E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g949 . . . . . . . . . . Cma01g01912 Cma09g00156 Car01g01493 . . Cpe06g00111 . . . . . . . . . . . . . . . . . Cone17ag1344 . Lsi04g01667 Csa03g04212 Chy04g00507 . Blo17g00799 . . . . . . Bma05g00121 . Cmo01g01974 Cmo09g00155 . . . Car09g00138 . Cpe02g00125 . . . . . . . Cla05g01938 Cam05g2082 Cec05g2095 Cco05g2146 Clacu05g2078 Cmu05g1952 Cre05g2073 . . . Cme04g00563
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001845 2 11 1 1 1 2 3 1 1 1 1 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 8 1 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01667 Lsi_Chr04 FPKM 0.706431 1.169309 0.0 0.0 0.652928 0.934162 0.568304 0.0 0.356759 0.589375