Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01686 ATGCCTCTGAGAGGCATAATTCGTGAGAAAAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAGGAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCCGTTACCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGCCGGGATGTTGTTACATGTGCTTCAGTTTGCAGGTCATGGCGGATAATTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATTTCTCTGAAGCAGCCCGGACCAAGAGACACTCCGATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTTAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTTCCAGACGACTTCTCCCGGGCAAGCAACAATTATTTAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAATCAGCCTCCTCATGACCCAAAATTGCGAACCAGTAGATCAAAAAGAAGAATCCATTTCAAACAGGTTTCTCCAAGTAAAACTCCGACAAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAATGTCCTCCGCACCAGAGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACCGAGTTCAAAGACTGTAAAAGTGAGCATCATTCATCTACATCGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCTGAGCCTCAGGAACCGATAGCTCCATTGGTATTAAAGAACAAAGCTCCGAGATGGCATGAGCAACTTCAATGTTGGTGCTTGAACTTCAAAGGGCGTGTCACGGTCGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCCGCAGAGACGAGTCAAAACGTATCTGCAGCTGAACAAGAAAGAGTGATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1221 47.09 MPLRGIIREKSEIREGSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSPLPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRIITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYLGKLRSNFLGTKFSIYDNQPPHDPKLRTSRSKRRIHFKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCKSEHHSSTSISKGKKPITGSPEPQEPIAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24240314 24243985 - Lsi04G016860.1 Lsi04g01686 661735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01686 406 SUPERFAMILY Tubby C-terminal domain-like 105 406 IPR025659 -
Lsi04g01686 406 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Lsi04g01686 406 MobiDBLite consensus disorder prediction 280 309 - -
Lsi04g01686 406 Gene3D - 51 104 - -
Lsi04g01686 406 ProSitePatterns Tub family signature 2. 391 406 IPR018066 -
Lsi04g01686 406 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lsi04g01686 406 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Lsi04g01686 406 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Lsi04g01686 406 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Lsi04g01686 406 PRINTS Tubby superfamily signature 363 382 IPR000007 -
Lsi04g01686 406 PRINTS Tubby superfamily signature 334 350 IPR000007 -
Lsi04g01686 406 PRINTS Tubby superfamily signature 316 333 IPR000007 -
Lsi04g01686 406 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 406 - -
Lsi04g01686 406 PANTHER TUBBY-RELATED 1 406 - -
Lsi04g01686 406 ProSitePatterns Tub family signature 1. 334 347 IPR018066 -
Lsi04g01686 406 Pfam F-box domain 56 103 IPR001810 GO:0005515
Lsi04g01686 406 Gene3D Tubby Protein; Chain A 114 406 IPR025659 -
Lsi04g01686 406 Pfam Tub family 117 401 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01686 Lsi-Chr4:24240314 Lsi05g00201 Lsi-Chr5:2777209 3.42E-152 dispersed
Lsi07g00877 Lsi-Chr7:9959232 Lsi04g01686 Lsi-Chr4:24240314 1.40E-128 transposed
Lsi08g00296 Lsi-Chr8:7776228 Lsi04g01686 Lsi-Chr4:24240314 1.50E-152 transposed
Lsi08g00555 Lsi-Chr8:13741039 Lsi04g01686 Lsi-Chr4:24240314 1.00E-153 transposed
Lsi01g00669 Lsi-Chr1:5398418 Lsi04g01686 Lsi-Chr4:24240314 8.56E-148 wgd
Lsi04g01686 Lsi-Chr4:24240314 Lsi07g00258 Lsi-Chr7:2829163 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25218 PF01167 Tub 3.60E-105 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01686 K19600 - csv:101222500 759.599