Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01688 ATGGAGTATCGAGCTTCGTCGACTGTCTACAAGAAACTTTCAAATGCTCGCAGTTTCAACGATAAATCGGCGTACGATGGTATCTTCGCTGCTCCGTCGAAGCACGGAGCTCCGGTCTTCTCTGCGCGAGTCGAGGACTACAGAGAGATTTTTGGCGGTTCGCGAGTTTCATCGATTCCGATTCTCGATGTTCCGGCACTGAGTGATAAGAAGTTTCCGGTTGATGTTCGTACTTCGAAGGTTGAATATTCGAAGATTTTTGGTGGCTTCGATGAGTTAAATTTCGCCATACCTTATGAGGAGCTTCTGGCGGAGGCAAACAAAACAAATTCGTTTTCTCAGAAAACTCGGACTTCAGCTGGAAAAGGATCCGCGGCAGCTGAAAATTCTTCTCAGTATGAGAAGGAGAATAACTTTTCCACCCGTGAAGCATCGTCTGAACCACTTGATAGAATGGAGAAATTCAGCGTGTCATATCAAAAGATCAACCAAGGAAACAAAAGTTATGCTACGGAGACAGCTCACGTAGCTCTTCCCCATGCCATTCCAGGCTTTTCATGTTTAATTGATGAACACTCTCCTGTGCAGATGTGTGGAACTGGTATGCCAACGTCTGAAAAATTGAACAATATTTGCCCAGAAATCATTGGAAGTGAAGTGGCAAATGAAGCTGAACTTCCAATTTGTGGTGATAGTGAACAGGCTTTTAAATCAATTAATCCGACCAATTCTCAAAACAGAACTGGCTGGTTTAGATCAGATTCAGCTGATAAGTTATTCAATGGGTATGAGGTGGATCAAGGGGTGAAGAACCCTGACACTCCACCAAAATATAATTTTCTGCCTAAATTTGGTGTAAGTGAGGGATTTTCAGGGAGAACAACTGGTTTGAAGTCTGAAGCTATTGAACATTCTGAAGATCCTTTTGACGGTTCTTCGCCACCATATTTTGGTAAGGATGTTGAGGTGAATCCAGTTGCTGCTGCCTCGGTTGCAGCTTTGAGAAAAGCAATTGATGATGCTCAGGAAAGTATAAAAATTGCTAAGGAGTCGATGGAAAGAAGGAAAACTGCCAGACTTCAAAAACATAAAAAAACAAGGTCTTCTAGGAGCCAAAATTCTGAAGACAGAAGGGAAGTGAAAACTTCAAACAATTCAGGCCTGGGCAAAGAGAAGGTGGCTATGGAAGCTTGTGGAAAAGTGGATACTTCGGAGCAAGCAGTTGCTGAGATCAGGGGACAGAATTCATCTATAGAATGTCCTGTCACTCAAAGAGCAGTGAGGGAAAATTTAAATGCCTCAGGGAGAAATTATATGGAATTTGAGATGACAGAAGTTGATTGTAGAGAGGAAGAAGGAGAAGAATTAGATGCAAAAGAACAATTTTATGAACCTAGGTCTTTTGGTGAAGATGATGCAAAAGAACTGGAACCTGTCATGGAAGACAATGCAGATCGAGATGAATGGCAAGGAAACAATGGATTAAAGAAAACATTTGAGAATCCTGGAGAGTACGGTGATAGCTTGGTAGTGGTCAAAGAGACTAGAACCGAGGAAAGTGGCATAAACTTAAGTGTAGTTAAAGGTATTCTTATGAGCAAATTAAAGTCAGTTCTAGGTGTCGTTGAGCAGGAAGAAGATAAAATGACATGTGGGCAAAACCAAAACCAGCTAGAAACTAACATGAAAGCTGAGGCATCAATGGAACTTGAAAAATGTGTGGAATTTCTGGAAGAACTTAAAGCAACGAAAGATCATGAGGAGTTTGTAATCAAGGAGATGGGGGAAAGCAATGATACGGAGACCCAAGTTAAGGCTCATGAACGGGAGGTGGAGGAAGTAAGACATATCTGCCAACAAGAAGAAAGGGAGATGGAAACAAATACTGTCCAAATTGAAAATAATGTTGAAAAAATATTAAACAAATCTAATGGAGAGGAAAGAAATATAAATTGGATTGATGATTTCCATGATGGCAAAGATGCTCATGACATGAAAGAAAGTGGTGAATTGAAACTAAGCAAGGAACTTCAACAAAACAAACAGGATGATGAGATGATTGAAGGGCTTTCCTTTCATTTGTACAATCATGAGATTGGACAACATGTTCCTAGACAAACAAAAATTCGTGAATGTGCAGTACATGAGAGCATTCTAAAAGCAACGTTAGACAATCTGAATAGTGAGAGTAAAATTGAATTACAAGATGGTTTGTGTAAGCAGGATGAATGTGACAAGCTGTCAGAAGACCCGGAAGCTAGTGATTTTATAGAAAGTATGGAAGGAGTGGAAGTGATCACTGACCAACCTGTATATCGAGACACTGATAATTCAACTGATATAGCAAAGATTTCCTTTGAAGTTGTAAATCATGAATCTGAGACAATTACGGAGGGTGACATGGAGGATAGATTGCCTTTTGAATTGTTTTCCATGGCTGAGGATGCGCTTAAACGTAGAGAATTTAGAATAAAAATGGAAGATTCACACGCAAGCCCTATTTTCATCCACAATGAGATAGATTTTGGTGTGATCGATATGAAACTAGAGCAGAAGCAACATGATACTCCTGCAAACAGGTCCTCAATCTTTTGCAGTTTGGGAAATGCCGAAGGTTTGGCTCCTGAACTTAGAGGAATTGAGGGAAATATAAAGAAAATTGAATTCTCAACAAATAAAGAAAATGATGACGAAAATTCAAATGAAGAGACTCTCAGGACTGTAGGTAATGTTGAAACAGGCAATGAACCTGGTTCATCTGAAGATGACAAGAAAATCAGTGAAGAAGCAATGGAGGAAACTGTCACGAGCATAATTACTGAAGCAACTCAGGAGAACTATCAAGCAACCATCAAAGTAGAAGAAAGTGAAACTGATTTTGTTTTGAAAAAGGAAACACAGTTGGAATTCGATGAGGACAATAATAGCGTGGGTAGCCAATTTGGCAGGATTGAAATGGACTCAGGAATAATTCATATGATCAAAACAAGTCAAAGTTCAAGAGAAAGTGAGGAGAGTTATCAAGAAATCATGACAGAGGATGAAATGGTAGCTAGTGGTTCCTCTGACGAAGAGGTGGAATATGCAGCTTACTTGGAAAATTTGGAAAAAGTTAATTCGCCTGGAAGTTCTGGAAGAAAAGAAAATTTAGCCAATATAGAACAAGAAATTAGTACTAGCCAGAAGCTTACAGAAAATGAGGATCATCAAACAACCCCAACACTGGGTGAAATTGAAATTAATGCTGACATGCATAGGAGAGAAGCAGGGGTTGAATCCAAACTCAACAGTGAGACAGCAGCTCATGGTTTGTCTCAAGCTAAAGAGGTAGTAGATGAGTTACCTGAGAATTTGACTAATCAAAGTATCTTAGAAACTGGGGAGAATCTTCAAGCGACCCATCTAATGGAGGAGGAGAAGGTATTCCATGAGAAATTTGAGAAAGAAGCTGAAGTGATAAAGGGACGGCAGAGAAAAGTTGATGAAGCGAAAGAAAAGGAGAGGGAGAGAGAGAGATTAGCTGTAGAAAGAGCAATTCGAGAGGCTCGTGAAAGGGCATTTGTAGAAGCCCGAGAGAGGGCTGCTGCTGGGAGAGCTTCTGCTGACACTCGTCGAAGAGTAATGGCTGAGGCACGTGAACGCTCAGGGAAGATTTCCATAGAGGCCAATCATAAGCCTTCGGCTGAGAAGGTTTCAAAGGAAGCCAAATTAAAAGCTCAACGTGCTGTCGTTGAAATGGCTACTGCTGAGGCAAGAGAGCGTGCTTTAGAAAAAGCTATGTCTGAGAAGGCTATTTCTGAGGCAAGAAATCTGGCTGACAAGATTGTTGCCGAAAAATTACATGGTGCTGCTGCAGATAGCAAAATAAAGAAGAGCTTTTCATTTAGTGACTCTCAGCCAAAAGGCCCATGTTCTTCCAACAATTTCAGGCATGCGAATTCGTTTAACCTTGGAGGTCCTGACTCTTCAGAGAGAGAGGTGGGATCTGCTGGGGAATCAGCTCAGAGATGTAAAGCCAGGCTGGAGAGGCATCAACGAACAGTCGAGCGTGTGGCAAAAGCTCTTGCAGAGAAGAATATTCGTGACATTCTTGCACAGAAAGAACAGGAAGAGAGAAATAGACTAGCAGAAGCTCTAGATGCTGAAGTTAAAAGGTGGTCAAGTGGGAAGGAGGGAAATTTGCGTGCATTGCTTTCAACTCTTCAATATATCCTCGGGCCCGACAGTGGGTGGCAGCCAGTCCCTCTAACAGATATCATCACGACCGCTGCTGTCAAGAAAGCTTACCGTAGAGCAACGCTTTCAGTTCATCCTGACAAATTGCAACAACGTGGTGCAACCATTCAACAAAAATACATATGCGAGAAGGTTTTTGATCTTTTGAAGGTATGTACTAATCCATGCTGGCTGCATGGAACAGATTCAACGTGGAGGAACGATAGTAACACAATCATATCAGCATTGTCATGTCTACTAACCGTAGGTAGCGTATTGTTTGAAGGCAGTTACGATGGGAAATGCAACACAATTTTTTCGATCTGTAATCAATTATCTGTAAGAGACCGTTTGGTCATATATAAAAAGGGGGGCGGCATTTCTCTACAGTCGACATCATTTTAG 4620 41.15 MEYRASSTVYKKLSNARSFNDKSAYDGIFAAPSKHGAPVFSARVEDYREIFGGSRVSSIPILDVPALSDKKFPVDVRTSKVEYSKIFGGFDELNFAIPYEELLAEANKTNSFSQKTRTSAGKGSAAAENSSQYEKENNFSTREASSEPLDRMEKFSVSYQKINQGNKSYATETAHVALPHAIPGFSCLIDEHSPVQMCGTGMPTSEKLNNICPEIIGSEVANEAELPICGDSEQAFKSINPTNSQNRTGWFRSDSADKLFNGYEVDQGVKNPDTPPKYNFLPKFGVSEGFSGRTTGLKSEAIEHSEDPFDGSSPPYFGKDVEVNPVAAASVAALRKAIDDAQESIKIAKESMERRKTARLQKHKKTRSSRSQNSEDRREVKTSNNSGLGKEKVAMEACGKVDTSEQAVAEIRGQNSSIECPVTQRAVRENLNASGRNYMEFEMTEVDCREEEGEELDAKEQFYEPRSFGEDDAKELEPVMEDNADRDEWQGNNGLKKTFENPGEYGDSLVVVKETRTEESGINLSVVKGILMSKLKSVLGVVEQEEDKMTCGQNQNQLETNMKAEASMELEKCVEFLEELKATKDHEEFVIKEMGESNDTETQVKAHEREVEEVRHICQQEEREMETNTVQIENNVEKILNKSNGEERNINWIDDFHDGKDAHDMKESGELKLSKELQQNKQDDEMIEGLSFHLYNHEIGQHVPRQTKIRECAVHESILKATLDNLNSESKIELQDGLCKQDECDKLSEDPEASDFIESMEGVEVITDQPVYRDTDNSTDIAKISFEVVNHESETITEGDMEDRLPFELFSMAEDALKRREFRIKMEDSHASPIFIHNEIDFGVIDMKLEQKQHDTPANRSSIFCSLGNAEGLAPELRGIEGNIKKIEFSTNKENDDENSNEETLRTVGNVETGNEPGSSEDDKKISEEAMEETVTSIITEATQENYQATIKVEESETDFVLKKETQLEFDEDNNSVGSQFGRIEMDSGIIHMIKTSQSSRESEESYQEIMTEDEMVASGSSDEEVEYAAYLENLEKVNSPGSSGRKENLANIEQEISTSQKLTENEDHQTTPTLGEIEINADMHRREAGVESKLNSETAAHGLSQAKEVVDELPENLTNQSILETGENLQATHLMEEEKVFHEKFEKEAEVIKGRQRKVDEAKEKERERERLAVERAIREARERAFVEARERAAAGRASADTRRRVMAEARERSGKISIEANHKPSAEKVSKEAKLKAQRAVVEMATAEARERALEKAMSEKAISEARNLADKIVAEKLHGAAADSKIKKSFSFSDSQPKGPCSSNNFRHANSFNLGGPDSSEREVGSAGESAQRCKARLERHQRTVERVAKALAEKNIRDILAQKEQEERNRLAEALDAEVKRWSSGKEGNLRALLSTLQYILGPDSGWQPVPLTDIITTAAVKKAYRRATLSVHPDKLQQRGATIQQKYICEKVFDLLKVCTNPCWLHGTDSTWRNDSNTIISALSCLLTVGSVLFEGSYDGKCNTIFSICNQLSVRDRLVIYKKGGGISLQSTSF 1539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24273182 24279827 + Lsi04G016880.1 Lsi04g01688 661737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01688 1539 Coils Coil 604 624 - -
Lsi04g01688 1539 Gene3D DnaJ domain 1347 1466 IPR036869 -
Lsi04g01688 1539 MobiDBLite consensus disorder prediction 889 903 - -
Lsi04g01688 1539 Coils Coil 331 351 - -
Lsi04g01688 1539 MobiDBLite consensus disorder prediction 1293 1320 - -
Lsi04g01688 1539 PANTHER AUXILIN-LIKE PROTEIN 1 998 1462 - -
Lsi04g01688 1539 Coils Coil 1334 1385 - -
Lsi04g01688 1539 MobiDBLite consensus disorder prediction 368 385 - -
Lsi04g01688 1539 MobiDBLite consensus disorder prediction 110 145 - -
Lsi04g01688 1539 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 974 - -
Lsi04g01688 1539 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 998 1462 - -
Lsi04g01688 1539 PANTHER AUXILIN-LIKE PROTEIN 1 1 974 - -
Lsi04g01688 1539 MobiDBLite consensus disorder prediction 889 926 - -
Lsi04g01688 1539 Coils Coil 1156 1185 - -
Lsi04g01688 1539 MobiDBLite consensus disorder prediction 110 150 - -
Lsi04g01688 1539 MobiDBLite consensus disorder prediction 1293 1336 - -
Lsi04g01688 1539 MobiDBLite consensus disorder prediction 349 391 - -
Lsi04g01688 1539 SUPERFAMILY Chaperone J-domain 1332 1462 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01688 - - - bhj:120085690 2323.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01642 Lsi-Chr4:23897160 Lsi04g01688 Lsi-Chr4:24273182 4.40E-31 dispersed
Lsi04g01688 Lsi-Chr4:24273182 Lsi08g00460 Lsi-Chr8:12296349 5.03E-48 dispersed
Lsi04g01688 Lsi-Chr4:24273182 Lsi02g00919 Lsi-Chr2:8829069 2.46E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01688 Lsi_Chr04 FPKM 5.56379 7.268835 9.136252 9.425745 4.327524 4.025507 3.838444 12.223739 11.04553 11.741258