Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01693 ATGGAAGTTGCACAAATTCTTTGCATGAACAAGGGAGGTGGGGAAACGAGCTACGCTCAAAACTCATCCCTTCAAAGCAAAATCATATCCGACTCAAAGCGAATAACCGAGGAAGCAGTTGAGGCCATCATAAGCACTTCCAATACAAGCGGTGCGCCGCAAAGCATCTCCATAGCGGATTTGGGCTGCTCATCTGGGCCCAACACGTTGCTTTTAGTCTCCGACACCCTCAATCTTCTTTACGCTAAATGCAAACGCCTCGGCTACCCGCTGCCCGAAGTCTTGGTTTTCTTGAACGACCTCTTCAGTAACGACTTTAACTACATATTCGGGTCACTGCCCGATTTCCACCGGCGGCTCGCGGCCGAAAACGGCAGCGAGATTGGGCGTTGTTTTATCTCCGGCGTGCCGGGTTCTTTCTACGGAAGGTTGTTTCCTAAAAACAGCTTGAATTTTGTGCATTCTTCTTCGAGCCTGCATTGGCTGTCGAAGGTTCCAGAAGGTTTGGAAGGGGAAGGGAAAAGGAGGATGAATAAAGGGAAGCTTTATATTTCTTCGACGAGCCCAAGGAGTGTGTTGGAGGCTTACGGTGAACAGTTCAAGAATGACTTTTCGAGGTTTATAAAATCGCGATCTGAAGAAATGGTTAGTGGGGGCCGTATGGTTTTATCTCTTATGGGGAGAAAATCTATGGATCCTACAACTGCAGATAGCTGCCATCACTGGGAGCTCTTAGCTCAGGCTTTAACCACCTTGGCTTCTCAGGGTTTGGTTGATGAAGAAAAAATCGACTCATTTAACGCACCGTATTATGCGCCATGCATGGAAGAAGTGAAGATAGAGACAGAGAAAGAAGGTTCGTTCATAATAGATCGGTTCGAAGCGTTCGAGGTGGAATGGGATGGGTTTGCCGGCGAGGCTGAGAATGGTCTAAAAATTCTGACCAGAGGTCAACGAGTGGCAAAGACAATAAGGGCAGTGGTTGAAACCATGTTGGAGTCCCATTTTGGAGGCCATATTATGGATGCTTTGTTTGAGCATTATGGGGCCATTGTTCAACATTACTTGTCTAACCATAGAACTAAGTATACCAATTTGGTTGTTTCTTTTGTCAAGAAATGA 1122 46.43 MEVAQILCMNKGGGETSYAQNSSLQSKIISDSKRITEEAVEAIISTSNTSGAPQSISIADLGCSSGPNTLLLVSDTLNLLYAKCKRLGYPLPEVLVFLNDLFSNDFNYIFGSLPDFHRRLAAENGSEIGRCFISGVPGSFYGRLFPKNSLNFVHSSSSLHWLSKVPEGLEGEGKRRMNKGKLYISSTSPRSVLEAYGEQFKNDFSRFIKSRSEEMVSGGRMVLSLMGRKSMDPTTADSCHHWELLAQALTTLASQGLVDEEKIDSFNAPYYAPCMEEVKIETEKEGSFIIDRFEAFEVEWDGFAGEAENGLKILTRGQRVAKTIRAVVETMLESHFGGHIMDALFEHYGAIVQHYLSNHRTKYTNLVVSFVKK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24317138 24319661 - Lsi04G016930.1 Lsi04g01693 661742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01693 373 Pfam SAM dependent carboxyl methyltransferase 47 371 IPR005299 GO:0008168
Lsi04g01693 373 Gene3D - 6 359 IPR042086 -
Lsi04g01693 373 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 3 370 - -
Lsi04g01693 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 373 IPR029063 -
Lsi04g01693 373 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 3 370 IPR005299 GO:0008168
Lsi04g01693 373 Gene3D Vaccinia Virus protein VP39 21 299 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01693 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - csv:101220850 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00997 Lsi-Chr4:11010950 Lsi04g01693 Lsi-Chr4:24317138 3.09E-48 dispersed
Lsi04g00998 Lsi-Chr4:11033746 Lsi04g01693 Lsi-Chr4:24317138 5.35E-44 dispersed
Lsi04g01693 Lsi-Chr4:24317138 Lsi07g01092 Lsi-Chr7:16311016 2.06E-90 dispersed
Lsi01g00657 Lsi-Chr1:5292389 Lsi04g01693 Lsi-Chr4:24317138 4.85E-104 wgd
Lsi04g01693 Lsi-Chr4:24317138 Lsi07g00248 Lsi-Chr7:2717499 1.83E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g980 Blo01g01575 Blo12g00902 . . . . . . . . Cma01g01923 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01693 Csa03g04233 . . . . . . . . . . . Cmo01g01986 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01693 Lsi_Chr04 FPKM 0.669899 1.114834 0.42084 0.639031 5.006234 4.284582 4.978672 0.694409 0.434 0.514194