Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01696 ATGGGGACGTTGCAAGGACCAGTTGTTTGCCCTACTATTCGTGCGAAGCAAGCAGGGTTTTGTTCGTTGCCAATCAATCGTTCTTTAATGGCCTTTAGTTTTCGAAGAGGTGAATTATGGGGATTCACGGGGATCAACGGTTTGAATGCTAAGTTACCAGCTGTTTCTCTTAAAGGTTGTGCTAGAAAATGCAAGACATTGCGTTGCAGCTTCAGTTCATCATCTGACGACAATGGAAGTACAGCCGAGAACTTCAACGAGAAGGATGAAGAATATGTTGAATCGAGCGTGGTCGAGGCTGTTGAGGTGAAAAGTGGTGCCGATGGTTTCGTGATTAAAATGAGGGATGGTAGGCACTTAAGGTGTGTTCACAACAACCCTCATGGCGGGCATCTGCCTGATTATGCTCCACATCCTGCAATTGTGTTGAAGATGGAAGATGGGACTGGTCTTCTTCTTCCCATAATCGTGTTGGAAATGCCGAGTGTGCTGCTTATGGCTGCTGTGCGCAATGTTCCAATTGCCAGACCAACTATGTATCAAGTGGTAAAAGAGATGATTGACAAGATGGGTTATGAAATTGGTTGTGAGACTGACTGCCTCAGTTTTGATCTCCGACCTTCAGATGCAATAAACATTGCAGTCCGATGCAAGGTCCCAATTCAAGTGAACAAGTATCTTGCATACAGTGATGGTATGAGAGTTGTTGAAAGTGGGAAGCTGTCAACCCAGGCCCCTGCTACGGATGGCTTATTATTCACTGAACTGGATAGGCCTAGTGGTCAGCCTTGTGTTGAAGCTAAAGAGTTCAATCTCGTGAGGAATATGCTGATTGCTGCTGTTGAAGAGCGCTATAGAGATGCTGGTATCTATTCTGTTGCTCAATGA 888 45.27 MGTLQGPVVCPTIRAKQAGFCSLPINRSLMAFSFRRGELWGFTGINGLNAKLPAVSLKGCARKCKTLRCSFSSSSDDNGSTAENFNEKDEEYVESSVVEAVEVKSGADGFVIKMRDGRHLRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTMYQVVKEMIDKMGYEIGCETDCLSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVVESGKLSTQAPATDGLLFTELDRPSGQPCVEAKEFNLVRNMLIAAVEERYRDAGIYSVAQ 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24351506 24355411 - Lsi04G016960.1 Lsi04g01696 661745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01696 295 PANTHER NUCLEASE IN BASAL DEFENSE RESPONSE PROTEIN 195 291 - -
Lsi04g01696 295 SUPERFAMILY Hypothetical protein TM0160 122 239 IPR036104 GO:0004518
Lsi04g01696 295 PANTHER VON HIPPEL-LINDAU PROTEIN 195 291 - -
Lsi04g01696 295 Gene3D Bifunctional nuclease domain 196 241 IPR036104 GO:0004518
Lsi04g01696 295 Gene3D Bifunctional nuclease domain 129 195 IPR036104 GO:0004518
Lsi04g01696 295 PANTHER VON HIPPEL-LINDAU PROTEIN 1 194 - -
Lsi04g01696 295 PANTHER NUCLEASE IN BASAL DEFENSE RESPONSE PROTEIN 1 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01696 - - - csv:101220382 527.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01696 Lsi-Chr4:24351506 Lsi07g01076 Lsi-Chr7:16116429 9.84E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g989 Blo01g01576 . Bda01g00517 . Bpe02g00374 . . Bma01g02338 . . Cma01g01929 Cma09g00139 Car01g01506 . . Cpe06g00097 . . . . . . . . . . . . . . . . . . Cone20ag0125 Lsi04g01696 Csa03g04237 Chy04g00478 . . . . . . . . . . Cmo01g01992 Cmo09g00135 . . . Car09g00124 . Cpe02g00108 . . . . . . . Cla05g01915 Cam05g2052 Cec05g2063 Cco05g2116 . Cmu05g1923 Cre05g2046 . . . Cme04g00530
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005080 2 4 0 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01696 Lsi_Chr04 FPKM 11.321892 11.672368 15.857116 16.616791 9.129357 8.605805 9.393905 7.159143 6.460546 7.711685