Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01698 ATGTTGGCCTCCGCCGGAAATTTCAGCCACTCCCAGGATAATTTCTGTATTTTTAAAGAAACACTCTCCGATTTTCATGATCAGATTCAACCTCCACCGGCCAGCCTCCCAAGTATTCCAAGTAAAATGACACACTTCAACAGTGAAGTAACTGAACCAAAACGACCTTGTAACTCCATGGAACCCAGGCTGAATCAACAATCTCCTCCTCTTAAGAAATCGCGATTGGACTCACGCGCTTCTTGCCCACCATTTAAGGTTAGAAAAGAGAAATTGGGCGATAGAATTGCAGCCCTTCAACAATTGGTGGCACCCTTTGGCAAGACAGACACAGCATCTGTGTTAATGGAGGCCATTGGATACATAAAATTCCTTCAAAATCAGGTTGAGACATTGAGCGTTCCATACATGAAACCCGCCTGCAATAAAACCACTAAGCCGACACATCGGAGTTCGGTGGAGGACGGAAATGAAGGGGGGCAAAATCGAGATCTCAGAAGTAGAGGGCTGTGTTTGGTTCCATTGGGGTGCTTGTCTTACGTGACCGGCGACGGCGGTGGTGGCGGCGGATTTTGGCCGCCACCGGGGTTTAATGGAGGAACTTCTTGA 609 47.78 MLASAGNFSHSQDNFCIFKETLSDFHDQIQPPPASLPSIPSKMTHFNSEVTEPKRPCNSMEPRLNQQSPPLKKSRLDSRASCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKPACNKTTKPTHRSSVEDGNEGGQNRDLRSRGLCLVPLGCLSYVTGDGGGGGGFWPPPGFNGGTS 202
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 24360908 24364014 - Lsi04G016980.1 Lsi04g01698 661747
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01698 202 CDD bHLH_AtbHLH_like 83 133 IPR045239 -
Lsi04g01698 202 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 184 - -
Lsi04g01698 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 125 IPR011598 GO:0046983
Lsi04g01698 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 138 IPR036638 GO:0046983
Lsi04g01698 202 MobiDBLite consensus disorder prediction 47 79 - -
Lsi04g01698 202 MobiDBLite consensus disorder prediction 148 162 - -
Lsi04g01698 202 MobiDBLite consensus disorder prediction 143 164 - -
Lsi04g01698 202 Gene3D - 86 141 IPR036638 GO:0046983
Lsi04g01698 202 MobiDBLite consensus disorder prediction 47 74 - -
Lsi04g01698 202 PANTHER OS01G0105700 PROTEIN 10 184 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi04g01698 Lsi08g01375 CCT
Lsi04g01698 Lsi08g01375 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00375 Lsi-Chr1:3301013 Lsi04g01698 Lsi-Chr4:24360908 1.24E-32 dispersed
Lsi04g01698 Lsi-Chr4:24360908 Lsi07g00339 Lsi-Chr7:3579414 2.49E-26 dispersed
Lsi01g00645 Lsi-Chr1:5206282 Lsi04g01698 Lsi-Chr4:24360908 5.32E-46 wgd
Lsi04g01698 Lsi-Chr4:24360908 Lsi08g01375 Lsi-Chr8:22053426 2.70E-53 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01698 - - bhj:120085117 351.673