Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01698 | ATGTTGGCCTCCGCCGGAAATTTCAGCCACTCCCAGGATAATTTCTGTATTTTTAAAGAAACACTCTCCGATTTTCATGATCAGATTCAACCTCCACCGGCCAGCCTCCCAAGTATTCCAAGTAAAATGACACACTTCAACAGTGAAGTAACTGAACCAAAACGACCTTGTAACTCCATGGAACCCAGGCTGAATCAACAATCTCCTCCTCTTAAGAAATCGCGATTGGACTCACGCGCTTCTTGCCCACCATTTAAGGTTAGAAAAGAGAAATTGGGCGATAGAATTGCAGCCCTTCAACAATTGGTGGCACCCTTTGGCAAGACAGACACAGCATCTGTGTTAATGGAGGCCATTGGATACATAAAATTCCTTCAAAATCAGGTTGAGACATTGAGCGTTCCATACATGAAACCCGCCTGCAATAAAACCACTAAGCCGACACATCGGAGTTCGGTGGAGGACGGAAATGAAGGGGGGCAAAATCGAGATCTCAGAAGTAGAGGGCTGTGTTTGGTTCCATTGGGGTGCTTGTCTTACGTGACCGGCGACGGCGGTGGTGGCGGCGGATTTTGGCCGCCACCGGGGTTTAATGGAGGAACTTCTTGA | 609 | 47.78 | MLASAGNFSHSQDNFCIFKETLSDFHDQIQPPPASLPSIPSKMTHFNSEVTEPKRPCNSMEPRLNQQSPPLKKSRLDSRASCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKPACNKTTKPTHRSSVEDGNEGGQNRDLRSRGLCLVPLGCLSYVTGDGGGGGGFWPPPGFNGGTS | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 24360908 | 24364014 | - | Lsi04G016980.1 | Lsi04g01698 | 661747 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01698 | 202 | CDD | bHLH_AtbHLH_like | 83 | 133 | IPR045239 | - | |
| Lsi04g01698 | 202 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 10 | 184 | - | - | |
| Lsi04g01698 | 202 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 76 | 125 | IPR011598 | GO:0046983 | |
| Lsi04g01698 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 86 | 138 | IPR036638 | GO:0046983 | |
| Lsi04g01698 | 202 | MobiDBLite | consensus disorder prediction | 47 | 79 | - | - | |
| Lsi04g01698 | 202 | MobiDBLite | consensus disorder prediction | 148 | 162 | - | - | |
| Lsi04g01698 | 202 | MobiDBLite | consensus disorder prediction | 143 | 164 | - | - | |
| Lsi04g01698 | 202 | Gene3D | - | 86 | 141 | IPR036638 | GO:0046983 | |
| Lsi04g01698 | 202 | MobiDBLite | consensus disorder prediction | 47 | 74 | - | - | |
| Lsi04g01698 | 202 | PANTHER | OS01G0105700 PROTEIN | 10 | 184 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi04g01698 | Lsi08g01375 | CCT | |
| Lsi04g01698 | Lsi08g01375 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00375 | Lsi-Chr1:3301013 | Lsi04g01698 | Lsi-Chr4:24360908 | 1.24E-32 | dispersed | |
| Lsi04g01698 | Lsi-Chr4:24360908 | Lsi07g00339 | Lsi-Chr7:3579414 | 2.49E-26 | dispersed | |
| Lsi01g00645 | Lsi-Chr1:5206282 | Lsi04g01698 | Lsi-Chr4:24360908 | 5.32E-46 | wgd | |
| Lsi04g01698 | Lsi-Chr4:24360908 | Lsi08g01375 | Lsi-Chr8:22053426 | 2.70E-53 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01698 | - | - | bhj:120085117 | 351.673 |