Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01699 ATGGCGGCAAAGGAGGCGATAATAAAATCAAAATGTGAGGAACTCCCAAAGTGCGAGTATCGAAACGATGCCGTATTGATAAAACCAAGCAGCGAAACACCGAAGCAGATTCTGCTACTTTCCGATGTGGATGATCAAATATTTCTAAGATTTTCGATAAAATGTGTATTGGTTTACAGAGGATCGATGGAAGCAGAATGGTTGAAATTGTGTCTTTCGAGAGTTCTAGTTGATTATTATCCACTGGCTGGGCGGCTCAGGACTTGTCCCGTGGACCCTCAGAAACTTGAAGTTGATTGCAATGGAGAGGGTGCTTTGTTTGCTGAAGCCTTTTTGGACCTTAATTCTCACCATTTTCTTTCCTTTTCTTCAAACCCAAACGCTTCTTGGATAACCCTTTTATATAAGCCTAAGCTGGATCCCCTAAATTTCACTCAACTCCCTCCTCTCCTTCTTCAGGTTACGTATCTCCGGTGTGGTGGTATGATTCTAACCACGGCGATCCATCACTGTTTATGCGACGGCATTGGAACGTCCCAATTTCTGCATGCCTGGGCCCACATAACTTCCCAATCAAATCTCATCCGTCCACTTATTCCACCGTCCCACAGCCGCCACGTGTTATCTCATCGAGACCCCACCACAATCCACTGCGCATACCCCCAGTATACCAAAACCCCACGCGCCAACTGGGACGTCGACATCACCAAATCCCTCCAATCTCAACCGTTGATCTCCTCTTCCTCGATCTTCACCACCTCTCAAATCCTCCGCCTCAAACCCTCCTTCGACTGCACCACATTTGAGACCCTAGCTTCTCACACGTGGCGTTCCTGGATTCGTTCTCTCGATCTCCCCCCTTCTCTCCACGTCAAGCTTCTTTTCCCTGTAAATATCCGCAACAGACTTTCCCCCAAAATCCCTCACGGCTATTACGGAAATGCCTTCATTCTCGGATGCGCCGAATCTTCTGTTAACGAATTGGTCGTTGCTCACGACTTAAACGACATCGTTCGCTTGCTGCAGAACGCCAAATCGATCATCGACGACGATTACGTCAAGTCCACGATCTTTCTACTTGAGGACAAAAGCCTCCAAGCCGACTTGTCGGCCAGTTTGGTTATATCGGACTGGTCAAAATTAGGATTACAGGACTTAGATTTTGGGTTCGGGAAGCCTCTTGAAATGAGCCCGTTGGCCAGCGATGTCTTCTGCTTTTTTCCGCCGGTGATCAGAGATGTTAAGGCCGTCAGAGTTCTCGTGTCCCTTCCGGCGAATGTGGTTGAGAAGTTTGAGTATTACATGACTGGAGAGATCTTTTCCGATCGACAAACAAACGTTTGA 1344 47.47 MAAKEAIIKSKCEELPKCEYRNDAVLIKPSSETPKQILLLSDVDDQIFLRFSIKCVLVYRGSMEAEWLKLCLSRVLVDYYPLAGRLRTCPVDPQKLEVDCNGEGALFAEAFLDLNSHHFLSFSSNPNASWITLLYKPKLDPLNFTQLPPLLLQVTYLRCGGMILTTAIHHCLCDGIGTSQFLHAWAHITSQSNLIRPLIPPSHSRHVLSHRDPTTIHCAYPQYTKTPRANWDVDITKSLQSQPLISSSSIFTTSQILRLKPSFDCTTFETLASHTWRSWIRSLDLPPSLHVKLLFPVNIRNRLSPKIPHGYYGNAFILGCAESSVNELVVAHDLNDIVRLLQNAKSIIDDDYVKSTIFLLEDKSLQADLSASLVISDWSKLGLQDLDFGFGKPLEMSPLASDVFCFFPPVIRDVKAVRVLVSLPANVVEKFEYYMTGEIFSDRQTNV 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24372809 24375913 - Lsi04G016990.1 Lsi04g01699 661748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01699 447 Gene3D - 21 225 IPR023213 -
Lsi04g01699 447 PANTHER BNAC03G58010D PROTEIN 17 436 - -
Lsi04g01699 447 Pfam Transferase family 26 433 - -
Lsi04g01699 447 Gene3D - 233 436 IPR023213 -
Lsi04g01699 447 SUPERFAMILY CoA-dependent acyltransferases 51 202 - -
Lsi04g01699 447 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 17 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01699 - - - csv:101205368 692.575
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01699 Lsi08g01373 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01084 Lsi-Chr4:13043057 Lsi04g01699 Lsi-Chr4:24372809 8.33E-83 dispersed
Lsi04g01699 Lsi-Chr4:24372809 Lsi06g01658 Lsi-Chr6:26839428 7.47E-59 dispersed
Lsi04g00724 Lsi-Chr4:6607803 Lsi04g01699 Lsi-Chr4:24372809 5.08E-38 transposed
Lsi04g01699 Lsi-Chr4:24372809 Lsi08g01373 Lsi-Chr8:22029349 3.66E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g992 . . . . . . . . . Cmo12g00396 . Cma09g00136 . Car12g00421 . Cpe06g00095 Cpe07g00400 Bhi04g00196 . . . Hepe10g0614 . . Cla08g01464 Cam08g1952 Cec08g1527 Cco08g1665 Clacu08g1642 . Cre08g1427 . . . Cone20ag0123 Lsi04g01699 Csa03g04240 Chy04g00476 Cme03g01930 . Blo18g00804 . Bda01g01509 . . Bma01g00751 . . . Cmo09g00132 Cma12g00446 . . Car09g00122 . . . . . . . . . Cla05g01912 Cam05g2049 Cec05g2060 Cco05g2114 Clacu05g2044 Cmu05g1921 Cre05g2044 Lsi08g01373 Csa02g02078 Chy03g01435 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014511 0 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01699 Lsi_Chr04 FPKM 42.844372 48.109341 5.454968 4.657828 106.100021 115.798363 96.024353 15.798229 16.03862 15.295733