Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01706 ATGACAAAGTGGGAGCTCTCGAAGCTTTCCGAATGGTTCGATTTCATATGCACCGCAAATGGGGCTTTCCAATTGCTTCTTCATTTCCTTATTGTCTTCTACTACTTCTACTATAAATGGAGCCATTCAGAAAAGAGCGAAGTGATTACGTGCCATACCGTTGGATCATGGAACCAGCAGCTCCTCAAAGGAAAACAATCCGATAAACTGATTGTTGTGGACTTCACTGCCGCATGGTGCGGTCCGTGCCGTGCCATCGCTCCAGTTTTTGTAGAGTTGGCTAAGAAGATGAGTAATGTCATATTCTTGAAGGTCGATGTTGATAAATTGACTACTGTTGCTGCGGAATGGGGAGTGAGTGCACTCCCTTGTTTCATGTTCTTGAAGAATGGGAAGGTGGTGAACAGGTTTGTAGGAGCAAGAAAAGATGAATTGCAGAAGCTTGTATTACAACATGCCTAA 462 43.94 MTKWELSKLSEWFDFICTANGAFQLLLHFLIVFYYFYYKWSHSEKSEVITCHTVGSWNQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAKKMSNVIFLKVDVDKLTTVAAEWGVSALPCFMFLKNGKVVNRFVGARKDELQKLVLQHA 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24424625 24425783 - Lsi04G017060.1 Lsi04g01706 661755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01706 153 Pfam Thioredoxin 51 149 IPR013766 -
Lsi04g01706 153 Gene3D Glutaredoxin 32 153 - -
Lsi04g01706 153 ProSitePatterns Thioredoxin family active site. 72 90 IPR017937 -
Lsi04g01706 153 PANTHER THIOREDOXIN 44 153 - -
Lsi04g01706 153 PANTHER THIOREDOXIN 44 153 - -
Lsi04g01706 153 SUPERFAMILY Thioredoxin-like 40 152 IPR036249 -
Lsi04g01706 153 ProSiteProfiles Thioredoxin domain profile. 40 153 IPR013766 -
Lsi04g01706 153 CDD TRX_family 66 149 - -
Lsi04g01706 153 PRINTS Thioredoxin family signature 118 129 - -
Lsi04g01706 153 PRINTS Thioredoxin family signature 79 88 - -
Lsi04g01706 153 PRINTS Thioredoxin family signature 71 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01706 K03671 trxA; thioredoxin 1 - csv:101219430 201.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01706 Lsi08g01361 CCT
Lsi04g01706 Lsi08g01361 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00929 Lsi-Chr4:9608199 Lsi04g01706 Lsi-Chr4:24424625 2.91E-38 dispersed
Lsi04g00930 Lsi-Chr4:9612602 Lsi04g01706 Lsi-Chr4:24424625 1.97E-46 dispersed
Lsi04g01706 Lsi-Chr4:24424625 Lsi08g01362 Lsi-Chr8:21923162 3.85E-39 dispersed
Lsi03g01457 Lsi-Chr3:25468250 Lsi04g01706 Lsi-Chr4:24424625 1.57E-31 transposed
Lsi04g00482 Lsi-Chr4:4483319 Lsi04g01706 Lsi-Chr4:24424625 1.92E-37 transposed
Lsi06g00659 Lsi-Chr6:10008043 Lsi04g01706 Lsi-Chr4:24424625 8.23E-17 transposed
Lsi08g01294 Lsi-Chr8:21324216 Lsi04g01706 Lsi-Chr4:24424625 9.69E-12 transposed
Lsi01g00634 Lsi-Chr1:5114537 Lsi04g01706 Lsi-Chr4:24424625 2.61E-43 wgd
Lsi04g01706 Lsi-Chr4:24424625 Lsi08g01360 Lsi-Chr8:21915012 1.68E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000895 2 4 1 1 1 4 3 4 4 4 2 4 3 3 4 3 4 3 3 4 4 2 2 3 2 3 3 6 2 0 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01706 Lsi_Chr04 FPKM 2.708583 3.977666 3.365971 2.717273 7.309936 5.1987 4.959718 3.707473 4.561981 4.637715