Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01709 ATGGACGTCGATCCTCGTCACTACGACCACATCGCTGTCAATGACGGTGATATCCAGAACATTGTTCTGTCGTACCTTGTTCATAACTGTTATAAAGAAACTGCAGAGTCGTTCACTACCTGTACTGGGCTTAAGCAGCACACGGATTATCTTGTTGACATGGAAAAAAGAAAAAGAATTTATGATTTTGCAGTCGAAGGGAATGCACTTAAGGCCATTGAGTTAACAGACGAGGTAGCACATGGTTTACTTGAGAAGAATGAGGACCTGCATTTTGATCTTTTAAGTCTTCATTTTGTTGAACTTGTTTGCTCTAGGAAATGCACAGAGGCCCTGGAATTTGCTCAGGTCAAGCTTGCCCCTTTCGGAAAGTTGCATAAATATGTGGAAAAACTTGAAGATTTCATGGCCCTCCTTGCTTATGAAGAACCAGAGAAGTCTCCAATGTTTCATCTGCTTAGCGTGGATTACCGGCAAAGAGTAGCAGAAAGTCTAAATCGAGCAATTCTTGGTTTGTTCCTTTTTTCCTTTTCACATGGAAATTTGCCGAGCTATACAGCAATGGAAAGACTGATAAAGCAGGCGACTGTAGTTAGACAGTCCTTGAGTCAAGAGCTGGGCAAGACAAGTAATTTTAGTCAAGGATCATATTTGCTGCCCAAACAAGTTATGTTTTCCCCTAAACTTAAAATTGGTTTATCTTTGGGATGGGCTTCAATCATTTTCTTTGAGGGATTTTCTGAAAAGCTAATTCGAAGAGTTCGCGGTCAGGCTCACAGCAACGAGAAATGCCGTGTAGGCCATAAACTAAGTCATCTGGGTCCCCTGAGCTTGTTCGTTTCCTTTCAGTTTGGTCAGCTTTGGGCTAAAAATGGAGTAGAGTTTGGGGCTAGATATTTGGGCTCAAATAAAGTTATTGGGCCTAGATATTTGAGCTCAAATCAAGTGTCCAGTATACGCCACGGGCTCATCGGTGGCACGCACACCTCGCTGCCTGTTCATGATTCTGCAGAAGATCCCAAGCGCTACGGAAACAGAGGTTTCCCTGGGTATTTGAGCTACTGCTCAATTAAGTGCAAATTAGCTAGGGTCGTGGACTCTTCAGCTAACCCAGCTACATTGACAAAAGAAGCTCATAAGTATTTTGATCAGGCTATCATAACAGTTCGTTCAGGAGATGGAGGCCATGGTACAGTTCTTAGTATGCCTAACCAACAAACAAGCAAGTCCCAAGGAAAACATGGGAAAGAGAAGGACAGGGCGAAGAAGAAAAGTTTGTATAAAAGGGACTTTGATGGATCTCTAATTCTTCCCATGGGTGGCCGTGGCGGAGACGTGGTAATTTATGCTGATGAGGGGAAAGATTCGCTGCTGGAGTTTCACACCAAGAGCCGGTATAATGCAAAACGTGGTGGAAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCACAATGGATTTGCTGCCCCAACTCTGCGTATTCCCGTTCCTATAGGTACCGTTGTAAAACGTAAAAGAGGAAAATTGTTGGCTGATCTAGTCCATCCAGGTGACGAGATTCTTGTAGCTAGAGGAGGACAAGGAGGGATAAGCCTGATAGATACGCCAGAGAGTAGAAGGAAAAAGTTGATGTCTCTGACCTCCAATGTGATGAGAGATGAAAGTGATAAGGTTCTGGTATTTGGTCAACCTGGGGAAGAGGTCAGTTTGGAGTTGATTCTTCGGGTAGTTGCCGATGTCGGTCTGATTGGACTTCCCAATGCTGGAAAATCAACCCTTCTTGCAGCCATTACTCTTGCAAAACCCGATATCGCAGACTATCCTTTCACTACGTTAATTCCGAACCTTGGACGCCTTGATGGGGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCTACTTTAGCAGATTTACCAGGTCTTATTGAAGGTGCTCACTTGGGTAAGGGTCTTGGTCGCAACTTCCTGAGACATCTGAGAAGGACCTGGCTATTGGTTCATGTTGTTGATGCAGCTGCAGAGAACCCTGTGGATGATTATAGGACCGTGAGAGAAGAATTGCGGATGTACAATCCTAATTACCTCGAAAGACCGTATGTTGTGGTGCTAAATAAGATTGACCTTCCCGAGGCCAGGGATAGGCTTCCATCCATAACTGAAGAAATATTGAGAATTGGAACTGATGATCGTTACCCTAAGCAAATGGGATCCGAAAACAGTGCACAATCATCAGTTCTAGAAGGTGATCTTGCAACTGTTTCTTCTTTGGGAATTCCAGTTGCAGATGAAAAGGATAAAGAGATTGAAGACTATCCCCGTCCTCTTTCTGTTGTAGGCGTTAGTGTTCTGAAAGGTATCAATATAAGTTTAATGTTGAAAGAGATTCGAGCAGCATTGAGGAAGTGCAGAGATTCCGATGGTGCGGCGATATTGAATTCGGGTGGTTAA 2454 43.85 MDVDPRHYDHIAVNDGDIQNIVLSYLVHNCYKETAESFTTCTGLKQHTDYLVDMEKRKRIYDFAVEGNALKAIELTDEVAHGLLEKNEDLHFDLLSLHFVELVCSRKCTEALEFAQVKLAPFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAESLNRAILGLFLFSFSHGNLPSYTAMERLIKQATVVRQSLSQELGKTSNFSQGSYLLPKQVMFSPKLKIGLSLGWASIIFFEGFSEKLIRRVRGQAHSNEKCRVGHKLSHLGPLSLFVSFQFGQLWAKNGVEFGARYLGSNKVIGPRYLSSNQVSSIRHGLIGGTHTSLPVHDSAEDPKRYGNRGFPGYLSYCSIKCKLARVVDSSANPATLTKEAHKYFDQAIITVRSGDGGHGTVLSMPNQQTSKSQGKHGKEKDRAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHNGFAAPTLRIPVPIGTVVKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPESRRKKLMSLTSNVMRDESDKVLVFGQPGEEVSLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLDGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTWLLVHVVDAAAENPVDDYRTVREELRMYNPNYLERPYVVVLNKIDLPEARDRLPSITEEILRIGTDDRYPKQMGSENSAQSSVLEGDLATVSSLGIPVADEKDKEIEDYPRPLSVVGVSVLKGINISLMLKEIRAALRKCRDSDGAAILNSGG 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24431194 24439970 + Lsi04G017090.1 Lsi04g01709 661758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01709 817 Pfam 50S ribosome-binding GTPase 580 707 IPR006073 GO:0005525
Lsi04g01709 817 ProSitePatterns GTP1/OBG family signature. 639 652 IPR006074 GO:0005525
Lsi04g01709 817 Gene3D - 578 809 IPR027417 -
Lsi04g01709 817 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 354 809 - -
Lsi04g01709 817 SMART toby_final6 106 208 IPR013144 -
Lsi04g01709 817 CDD Obg 579 717 IPR031167 GO:0005525
Lsi04g01709 817 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Lsi04g01709 817 SMART ctlh 53 110 IPR006595 -
Lsi04g01709 817 Pfam CTLH/CRA C-terminal to LisH motif domain 54 202 IPR024964 -
Lsi04g01709 817 SUPERFAMILY Obg GTP-binding protein N-terminal domain 381 544 IPR036726 -
Lsi04g01709 817 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 354 809 IPR045086 GO:0003924|GO:0005525
Lsi04g01709 817 ProSiteProfiles Obg domain profile. 379 578 IPR006169 -
Lsi04g01709 817 MobiDBLite consensus disorder prediction 394 424 - -
Lsi04g01709 817 Gene3D GTP1/OBG domain 380 577 IPR036726 -
Lsi04g01709 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 801 IPR027417 -
Lsi04g01709 817 PRINTS GTP1/OBG GTP-binding protein family signature 602 620 IPR006073 GO:0005525
Lsi04g01709 817 PRINTS GTP1/OBG GTP-binding protein family signature 637 652 IPR006073 GO:0005525
Lsi04g01709 817 PRINTS GTP1/OBG GTP-binding protein family signature 654 672 IPR006073 GO:0005525
Lsi04g01709 817 PRINTS GTP1/OBG GTP-binding protein family signature 581 601 IPR006073 GO:0005525
Lsi04g01709 817 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 579 802 IPR031167 GO:0005525
Lsi04g01709 817 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Lsi04g01709 817 Pfam GTP1/OBG 440 576 IPR006169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01709 - - - csv:101218721 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00716 Lsi-Chr2:6451838 Lsi04g01709 Lsi-Chr4:24431194 2.87E-18 dispersed
Lsi04g01709 Lsi-Chr4:24431194 Lsi05g01519 Lsi-Chr5:22970645 3.82E-49 dispersed
Lsi04g01709 Lsi-Chr4:24431194 Lsi07g00612 Lsi-Chr7:6589880 1.86E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1020 . . . . . . . . . . Cma01g01937 . Car01g01514 . . . . . . . . . . . . . . . . . . . . Cone17ag1368 Cone20ag0111 Lsi04g01709 Csa03g04247 Chy04g00467 . Blo17g00772 Blo18g00795 Bda08g01254 Bda01g01517 Bpe02g01713 Bpe05g00116 Bma01g00743 Bma05g00140 . Cmo01g01999 Cmo09g00125 . . . Car09g00114 . Cpe02g00099 . . . . . . . . . . . . . . . . . Cme04g00512
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01709 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0