Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01710 ATGGATAAAAAGCCCAGAAACACCACCACCACCAACGTTGCTCAGGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCTTCTTGCACTTTCAAAGGCGTTCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAACCGCGGTGCTCGTCTCTGGCTCGGCACCTTCGACACCGCTCATGAAGCTGCTGTGGCTTACGATGCTGCTGCTCGTAAACTCTATGGCTCCGAAGCTAAGCTCAATCTCCCTCAAACTACTCTTCCTCCTCCACCTCAGTTGGAACGTGGCGCCCAATCTCCCTTGAAAATCGATTCTTCTCCGACCGCTACGCTGACGACAACGGCGTCCTCTCCAATCGGAGGGCTGTGGGAGAATGAGAACGTGAATTTTGATGAGTCAATATGGAGGGAGGCTGTGATGTCTTTGGATTTTCCTATTATTGAAGATGATCAAGGGATTTTCTTCGATGGGGTCGGAAATTGGGACACTTTGCAGTGGTGCATGTGA 534 53.18 MDKKPRNTTTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSEAKLNLPQTTLPPPPQLERGAQSPLKIDSSPTATLTTTASSPIGGLWENENVNFDESIWREAVMSLDFPIIEDDQGIFFDGVGNWDTLQWCM 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24446110 24446643 + Lsi04G017100.1 Lsi04g01710 661759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01710 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 126 - -
Lsi04g01710 177 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Lsi04g01710 177 MobiDBLite consensus disorder prediction 90 127 - -
Lsi04g01710 177 MobiDBLite consensus disorder prediction 108 127 - -
Lsi04g01710 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 127 168 - -
Lsi04g01710 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 127 168 - -
Lsi04g01710 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 11 126 - -
Lsi04g01710 177 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Lsi04g01710 177 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Lsi04g01710 177 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Lsi04g01710 177 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Lsi04g01710 177 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Lsi04g01710 177 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Lsi04g01710 177 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Lsi04g01710 177 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01710 Lsi08g01358 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01710 Lsi-Chr4:24446110 Lsi07g00649 Lsi-Chr7:6907524 5.97E-23 dispersed
Lsi04g01710 Lsi-Chr4:24446110 Lsi08g01358 Lsi-Chr8:21900887 3.45E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25220 PF00847 AP2 2.40E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01710 - - csv:101204876 268.47