Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01711 ATGGCTGATATTGGAGGATCAGTTTCTGGGTCAAGAATGTGGTGTTCAATTCCTGAGAAGCTTCAACTACATGGCGCCATGTTGGCCTTGCAATTTGGCTATGCTGGCTTCCATGTTGTATCAAGGGCTGCTCTTAATATGGGCATTAGTAAACTTGTCTTCCTAGTTTATAGGAATATCATTGCCTTTTTCCTCCTCCTTCCCTTTGCATTTTTCCTTGAAAAGAAGGAGCGCCCTCCCATTACTTTCAATTTTCTCCTTCAGTTCTTCCTTCTTGCCCTTGTTGGAATAGAACAAGTGCGACTAAACAGAAAAGATGGTATAGCAAAAGTGATGGGAACAATATGCTGTGTTGCTGGGGCCACAGTGATCACTTTGTACAAAGGTCCAACAATATACAGCCCAGTTCATTCACTACAAACAGCTGCCACCACCACCACCGCACCCATTTTCGCTTCTCTTGGGGATGCAACCGGCAAAAGCTGGACCCTTGGCTGTGTCTTTTTGATCGGTCATTGCTTGTCTTGGTCTGGATGGCTTGTTTTGCAAGCACCCGTTTTGAAAAAATATCCAGCTCGTCTCTCTGTCACTTCTTATACTTGTTTCTTTGGGATAATCCAGTTTATCTTCATCGCTGCCATTGCCGAGCGAGATGCTCAGGCTTGGCTCTTTCACTCTGGTGGTGAAATCTTTAGCGTCTTGTATGCGGGAGTGGTAGCTTCGGGAATTGCTTTTGCAGTGCAGATATGGTGCATTCAAAGAGGTGGGCCTGTGTTCGTCGCTGTTTACCAACCAGTTCAGACTTTGGTTGTCGCTGTCATGGCTTCCTTCGCCTTGGGTGAAGAGTTCTTCTTGGGAGGGATAATCGGGGCGGTATTGATCATCACCGGCTTATACTTCGTGTTATGGGGCAAAAGCGAAGAGAGAAAATTTGCACTTGAGAAGGCTGCAATCCTCTCCGCTCCAGACCACACTAACAACAGAACACCCCCACTCATCAAGCCCTCCATAACTCAGCCACTTCTCATCCATTCATCAAACGACAACGTTTGA 1053 46.34 MADIGGSVSGSRMWCSIPEKLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFLVYRNIIAFFLLLPFAFFLEKKERPPITFNFLLQFFLLALVGIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPVHSLQTAATTTTAPIFASLGDATGKSWTLGCVFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGIIQFIFIAAIAERDAQAWLFHSGGEIFSVLYAGVVASGIAFAVQIWCIQRGGPVFVAVYQPVQTLVVAVMASFALGEEFFLGGIIGAVLIITGLYFVLWGKSEERKFALEKAAILSAPDHTNNRTPPLIKPSITQPLLIHSSNDNV 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24449640 24453024 - Lsi04G017110.1 Lsi04g01711 661760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01711 350 PANTHER WAT1-RELATED PROTEIN 97 329 IPR030184 GO:0016021|GO:0022857
Lsi04g01711 350 PANTHER WAT1-RELATED PROTEIN 15 97 IPR030184 GO:0016021|GO:0022857
Lsi04g01711 350 PANTHER WAT1-RELATED PROTEIN 97 329 - -
Lsi04g01711 350 PANTHER WAT1-RELATED PROTEIN 15 97 - -
Lsi04g01711 350 Pfam EamA-like transporter family 164 302 IPR000620 GO:0016020|GO:0016021
Lsi04g01711 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 307 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01711 Lsi08g01356 CCT
Lsi04g01711 Lsi08g01356 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01711 Lsi-Chr4:24449640 Lsi04g02384 Lsi-Chr4:30985937 8.59E-58 dispersed
Lsi04g01711 Lsi-Chr4:24449640 Lsi08g01356 Lsi-Chr8:21887221 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01711 - - csv:101218486 577.4